View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4622-Insertion-8 (Length: 658)
Name: NF4622-Insertion-8
Description: NF4622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4622-Insertion-8 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 516; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 8 - 561
Target Start/End: Original strand, 31734471 - 31735017
Alignment:
| Q |
8 |
aatccaatgagtgtgacaccattcgtgtacgcgatgctcgatccagttatgatgaatccttggcatcaattctctatgtggttaaaaaatgatgatacta |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31734471 |
aatccaatgagtgtgacaccattcgtgtacgcgatgctcgatccagttatgatgaatccttggcatcaattctctatgtggttaaaaaatgatgatacta |
31734570 |
T |
|
| Q |
108 |
catcatttgaaacgacacacgggatgttgttatgggaatatgctgcgtgtgactccaaatttaacaacttatttaatgagtcaatggcaaatgatgctca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31734571 |
catcatttgaaacgacacacgggatgttgttatgggaatatgctgcgtgtgactccaaatttaacaacttatttaatgagtcaatggcaaatgatgctca |
31734670 |
T |
|
| Q |
208 |
attagtttccaatttgttggttgaaaagtgcaagggagtgttcaatgaatttgagtcattggttgatgttggaggaggaacagggactatggcaaagact |
307 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31734671 |
attagtttccaatttgttggttgagaagtgcaagggagtgttcaatgaatttgagtcattggttgatgttggaggaggaacagggactatggcaaagact |
31734770 |
T |
|
| Q |
308 |
tttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgcaaggaagtgagaatctaagctatgttggtggag |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31734771 |
tttgccaaatcattcccacaaatggagtgcattgtgtttgatctaccacatgttgttgatggtttgcaaggaagtgagaatctaagctatgttggtggag |
31734870 |
T |
|
| Q |
408 |
acatgtttaaagaaattccgccaaccgatgcaattctgttgaaggtaaagtattaagataagtactccatagaaaatactctaatgttaagaatatgttt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31734871 |
acatgtttaaagaaattccgccaaccgatgcaattctgttgaaggtaaagtattaagataagtactccatagaaaatactctaatgttaagaatatgttt |
31734970 |
T |
|
| Q |
508 |
gtgtttaagccatgttatcaccagagtccagctagtaaggtttaatggaaatcc |
561 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
31734971 |
gtgtttaagccatgttatcaccaga-------tagtaaggtttaatggaaatcc |
31735017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 8 - 456
Target Start/End: Original strand, 31702631 - 31703079
Alignment:
| Q |
8 |
aatccaatgagtgtgacaccattcgtgtacgcgatgctcgatccagttatgatgaatccttggcatcaattctctatgtggttaaaaaatgatgatacta |
107 |
Q |
| |
|
||||| ||||| ||||||||||| || |||||||||||||||||||| ||| ||||| |||||||||||||||| |||||||||||||||||| ||| |
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|
| T |
31702631 |
aatccgatgagcgtgacaccatttgtacacgcgatgctcgatccagttttgacaaatccgtggcatcaattctctacttggttaaaaaatgatgatccta |
31702730 |
T |
|
| Q |
108 |
catcatttgaaacgacacacgggatgttgttatgggaatatgctgcgtgtgactccaaatttaacaacttatttaatgagtcaatggcaaatgatgctca |
207 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||| ||||||| |||| ||| |
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|
| T |
31702731 |
caacatttgaaacgacacacaggatgttgttatgggaatatgttgcgtgtgactccaaatttagcaacttattcaatgagtccatggcaagtgatactcg |
31702830 |
T |
|
| Q |
208 |
attagtttccaatttgttggttgaaaagtgcaagggagtgttcaatgaatttgagtcattggttgatgttggaggaggaacagggactatggcaaagact |
307 |
Q |
| |
|
|||||| ||||||||||| |||| ||||||| |||||| ||||||| || ||||||||||||||||||||||| || |||||||| ||||||||| | |
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|
| T |
31702831 |
attagtgaccaatttgttgattgagaagtgcaggggagtattcaatgggttggagtcattggttgatgttggaggtggcacagggaccatggcaaaggcc |
31702930 |
T |
|
| Q |
308 |
tttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgcaaggaagtgagaatctaagctatgttggtggag |
407 |
Q |
| |
|
|||| |||||||||||||||||||||| | |||||||||||| ||||||||||||||||| |||||||| ||||||||||||| |||||||||||||| |
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| T |
31702931 |
cttgctaaatcattcccacaaatggagtttagtgtatttgatctaccacatgttgttgatggcttgcaaggtagtgagaatctaaactatgttggtggag |
31703030 |
T |
|
| Q |
408 |
acatgtttaaagaaattccgccaaccgatgcaattctgttgaaggtaaa |
456 |
Q |
| |
|
||||||||||||||||||| ||||| || || ||| ||||||||||||| |
|
|
| T |
31703031 |
acatgtttaaagaaattcctccaacagacgccattttgttgaaggtaaa |
31703079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 8 - 456
Target Start/End: Original strand, 31711065 - 31711513
Alignment:
| Q |
8 |
aatccaatgagtgtgacaccattcgtgtacgcgatgctcgatccagttatgatgaatccttggcatcaattctctatgtggttaaaaaatgatgatacta |
107 |
Q |
| |
|
||||||||||||||| |||||| |||| |||| ||| || ||||||||||||||||||| ||| |||||||||||| |||||||||||||| ||||||| |
|
|
| T |
31711065 |
aatccaatgagtgtggcaccatacgtgcacgcaatggtcaatccagttatgatgaatccatggtatcaattctctacttggttaaaaaatgacgatacta |
31711164 |
T |
|
| Q |
108 |
catcatttgaaacgacacacgggatgttgttatgggaatatgctgcgtgtgactccaaatttaacaacttatttaatgagtcaatggcaaatgatgctca |
207 |
Q |
| |
|
|||| || |||||||| ||||||| |||||| |||||||| |||||||| || |||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
31711165 |
acacattcgagacgacacatgggatgtcaacatgggagtatgctgcacgtgactccgaaattaacaacttatttaacgagtcaatggcaaatgatactcg |
31711264 |
T |
|
| Q |
208 |
attagtttccaatttgttggttgaaaagtgcaagggagtgttcaatgaatttgagtcattggttgatgttggaggaggaacagggactatggcaaagact |
307 |
Q |
| |
|
||||||||| ||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||| |||||||||||| |
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|
| T |
31711265 |
attagtttctgatttgttggttgagaaatgcaagggagtgttcaatgaagttgagtcattggttgatgttggaggaggtacggggaccatggcaaagact |
31711364 |
T |
|
| Q |
308 |
tttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgcaaggaagtgagaatctaagctatgttggtggag |
407 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| || ||||| ||||||||||||| |
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|
| T |
31711365 |
cttgtcaaatcattcccacaaatggagtgcattgtgtttgatcttccacatgttgttgatggcttgcaaggaagtgaaaagctaagatatgttggtggag |
31711464 |
T |
|
| Q |
408 |
acatgtttaaagaaattccgccaaccgatgcaattctgttgaaggtaaa |
456 |
Q |
| |
|
|||||||||| |||||||| ||| | ||||||||| ||||||||||||| |
|
|
| T |
31711465 |
acatgtttaaggaaattccaccagcagatgcaattttgttgaaggtaaa |
31711513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 49 - 455
Target Start/End: Original strand, 31684133 - 31684539
Alignment:
| Q |
49 |
tccagttatgatgaatccttggcatcaattctctatgtggttaaaaaatgatgatactacatcatttgaaacgacacacgggatgttgttatgggaatat |
148 |
Q |
| |
|
||||||||||||| | || |||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||||| ||| |||| ||| |
|
|
| T |
31684133 |
tccagttatgatggagccatggcatcaattctcagcttggttaaaaaatgatgatattacagcatttgaaacaacacatgggatgtcgtttagggattat |
31684232 |
T |
|
| Q |
149 |
gctgcgtgtgactccaaatttaacaacttatttaatgagtcaatggcaaatgatgctcaattagtttccaatttgttggttgaaaagtgcaagggagtgt |
248 |
Q |
| |
|
||| ||||||||||| ||||||||| |||||| || ||||||||||| || ||| |||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
31684233 |
cttgcacgtgactccaaaattaacaactcatttaacgaatcaatggcaaaagaaactcgattagtttccgatttgttggttgagaagtgcaagggagtgt |
31684332 |
T |
|
| Q |
249 |
tcaatgaatttgagtcattggttgatgttggaggaggaacagggactatggcaaagacttttgccaaatcattcccacaaatggagtgcattgtatttga |
348 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31684333 |
tcaatgaagtcgagtcattggttgatgttggaggaggtacagggaccatggcaaaaactcttgccaaatcattcccacaaatggagtgcattgtatttga |
31684432 |
T |
|
| Q |
349 |
tcttccacatgttgttgatggtttgcaaggaagtgagaatctaagctatgttggtggagacatgtttaaagaaattccgccaaccgatgcaattctgttg |
448 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| || ||| ||||||||||||||||||||||||||||||||||||||| | ||||||| ||||| |
|
|
| T |
31684433 |
tcttccacatgttgttgatggtttgctaggaagtgaaaacttaaactatgttggtggagacatgtttaaagaaattccgccaacagctgcaattttgttg |
31684532 |
T |
|
| Q |
449 |
aaggtaa |
455 |
Q |
| |
|
||||||| |
|
|
| T |
31684533 |
aaggtaa |
31684539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 242 - 458
Target Start/End: Original strand, 31714268 - 31714484
Alignment:
| Q |
242 |
ggagtgttcaatgaatttgagtcattggttgatgttggaggaggaacagggactatggcaaagacttttgccaaatcattcccacaaatggagtgcattg |
341 |
Q |
| |
|
||||||||||||| ||| || ||||||||||||||||||||||| |||||||| ||||||||| || |||||||||||||||||||| | ||||||| || |
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|
| T |
31714268 |
ggagtgttcaatggattggaatcattggttgatgttggaggaggcacagggaccatggcaaaggctcttgccaaatcattcccacaattagagtgcactg |
31714367 |
T |
|
| Q |
342 |
tatttgatcttccacatgttgttgatggtttgcaaggaagtgagaatctaagctatgttggtggagacatgtttaaagaaattccgccaaccgatgcaat |
441 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||| |||| || ||| ||||||||||||||| |||||||| |||||| ||| | ||||| || |
|
|
| T |
31714368 |
tgtttgatcttccacatgttgttgatggcttgcaaggaggtgataacttaaactatgttggtggagatatgtttaagagaattcctccagctgatgctat |
31714467 |
T |
|
| Q |
442 |
tctgttgaaggtaaagt |
458 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
31714468 |
tttgttgaaggtaaagt |
31714484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 187
Target Start/End: Original strand, 31714141 - 31714242
Alignment:
| Q |
86 |
tggttaaaaaatgatgatactacatcatttgaaacgacacacgggatgttgttatgggaatatgctgcgtgtgactccaaatttaacaacttatttaatg |
185 |
Q |
| |
|
|||||||||| ||||||| || || |||||| ||| ||||| ||||||| | | ||||| ||||| ||| |||| | ||||||||||||||||| |||| |
|
|
| T |
31714141 |
tggttaaaaactgatgatccttcaacatttggaactacacatgggatgtcgatgtgggattatgcggcgcgtgagcctaaatttaacaacttattcaatg |
31714240 |
T |
|
| Q |
186 |
ag |
187 |
Q |
| |
|
|| |
|
|
| T |
31714241 |
ag |
31714242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 263 - 415
Target Start/End: Original strand, 30570306 - 30570458
Alignment:
| Q |
263 |
tcattggttgatgttggaggaggaacagggactatggcaaagacttttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttg |
362 |
Q |
| |
|
||||||||||||||||| ||||| | ||||||||| | ||| |||| || ||||||||| | || ||||||||||||||||||||||||||||||| |
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|
| T |
30570306 |
tcattggttgatgttggtggaggcatagggactattactaaggtcattgctaagtcattcccaaacattgagtgcattgtatttgatcttccacatgttg |
30570405 |
T |
|
| Q |
363 |
ttgatggtttgcaaggaagtgagaatctaagctatgttggtggagacatgttt |
415 |
Q |
| |
|
||||||| || ||||||||||| || ||| |||||||| || ||||||||| |
|
|
| T |
30570406 |
ttgatggcttacaaggaagtgaaaacttaaaatatgttggaggtgacatgttt |
30570458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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