View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4622-Insertion-9 (Length: 558)
Name: NF4622-Insertion-9
Description: NF4622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4622-Insertion-9 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 460; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 37 - 558
Target Start/End: Original strand, 33096398 - 33096930
Alignment:
| Q |
37 |
tatatgtggttcaatgcttaatttcttatagaatgaccaagagtccaagacatttttcattctataacagaacttgtggaacatatcagatgaaaagttg |
136 |
Q |
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| T |
33096398 |
tatatgtggttcaatgcttaatttcttatagaatgaccaagagtccaagacatttttcattctataacagaacttgtggaacatatcagatgaaaagttg |
33096497 |
T |
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| Q |
137 |
aaatttgttca---------ttttatatccaaatatactcaatttcttgctgcagaagttaacaggtcagagaatggttttcatcaccattctttacaag |
227 |
Q |
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| T |
33096498 |
aaatttgttcaaaagtaccattttatatccaaatatactcaatttcttgctgcagaagttaacaggtcagagaattgttttcatcaccattctttacaag |
33096597 |
T |
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| Q |
228 |
taaatatgcttttatatgaagtactatggttgctaaactttttatatgatt---ctagtaattttagaatactttcatcactagcaatgctatttggtag |
324 |
Q |
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| T |
33096598 |
taaatatgcttttatatgaagtactatggttgctaaactttttatatgattattctagtcattttagaatactttcatcactagcaatgctatttggtag |
33096697 |
T |
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| Q |
325 |
aaatattgacatcgagatctttattagtagtgttaagggaatggaaatattactggctgcattttaattataacatgcctttgtgtatctcatattgttt |
424 |
Q |
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| T |
33096698 |
aaatattgacatcgagatctttattagtagtgttaagggaatggaaatattactggctgcattttaattataacatgcctttgtgtatctcatattgttt |
33096797 |
T |
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| Q |
425 |
taaactttatggcatacatgccaacaattctagtagatacacacataacacgtttaaaattttatcacctcttgaattgtatcacttattaaagaaatca |
524 |
Q |
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| T |
33096798 |
taaactttat-gcatacatgccaacaattctagtagatacacacataacacatttaaaattttatcacctcttgaattgtatcacttattaaagaaatca |
33096896 |
T |
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| Q |
525 |
atttaattttatgccaaggtctcattgttttttc |
558 |
Q |
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| T |
33096897 |
atgtaattttatgccaaggtttcattgttttttc |
33096930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 37
Target Start/End: Original strand, 33096316 - 33096345
Alignment:
| Q |
8 |
tgcatatatcgatttacaaacccacttttt |
37 |
Q |
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| T |
33096316 |
tgcatatatcgatttacaaacccacttttt |
33096345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 386
Target Start/End: Original strand, 40743164 - 40743220
Alignment:
| Q |
330 |
ttgacatcgagatctttattagtagtgttaagggaatggaaatattactggctgcat |
386 |
Q |
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| T |
40743164 |
ttgacatggagatctttattagttgtgtcaagggaatggaaatattactggctgcat |
40743220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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