View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4622_high_1 (Length: 459)

Name: NF4622_high_1
Description: NF4622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4622_high_1
NF4622_high_1
[»] chr3 (5 HSPs)
chr3 (16-417)||(33095925-33096320)
chr3 (279-333)||(40878226-40878280)
chr3 (290-350)||(54923500-54923560)
chr3 (279-333)||(51053649-51053703)
chr3 (279-311)||(31812266-31812298)
[»] chr5 (3 HSPs)
chr5 (279-350)||(22792153-22792224)
chr5 (279-350)||(26526527-26526598)
chr5 (279-328)||(13542847-13542895)
[»] chr4 (6 HSPs)
chr4 (279-362)||(13849357-13849441)
chr4 (279-350)||(22988034-22988105)
chr4 (279-350)||(22717112-22717183)
chr4 (279-328)||(27031857-27031906)
chr4 (282-326)||(15540061-15540105)
chr4 (295-362)||(46343330-46343398)
[»] chr1 (5 HSPs)
chr1 (279-362)||(7204551-7204635)
chr1 (295-350)||(236584-236639)
chr1 (295-350)||(11064322-11064377)
chr1 (282-333)||(40685560-40685611)
chr1 (282-340)||(29511132-29511190)
[»] chr8 (7 HSPs)
chr8 (279-355)||(3728369-3728444)
chr8 (295-350)||(11098133-11098187)
chr8 (279-333)||(4312164-4312218)
chr8 (294-348)||(31291235-31291289)
chr8 (279-333)||(36442337-36442391)
chr8 (279-333)||(43149421-43149474)
chr8 (279-340)||(37817400-37817461)
[»] chr7 (3 HSPs)
chr7 (279-366)||(24333338-24333426)
chr7 (279-350)||(6328217-6328288)
chr7 (293-350)||(35289860-35289917)
[»] chr2 (2 HSPs)
chr2 (279-350)||(39417457-39417527)
chr2 (279-316)||(22999123-22999160)
[»] scaffold0027 (1 HSPs)
scaffold0027 (282-362)||(19359-19440)
[»] chr6 (1 HSPs)
chr6 (280-333)||(31242034-31242087)


Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 16 - 417
Target Start/End: Complemental strand, 33096320 - 33095925
Alignment:
Q  16 atgcaaacattacaaacacaattccatcaccgtattcattttaaattaaaattcattcgatgcgtatactatctcccgagccacagaaaaatatgcaaat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  33096320 atgcaaacattacaaacacaattccatcaccgtattcattttaaattaaaattcattcgatgcgtatactatgtcccgagccacagaaaaatatgcaaat 33096221  T
Q  116 caaaatggttcagagtgtaaacatctataacgagaagaagaaatctatagctccaacaaactttcggagaacataggtatgttttcttccttgaatagtg 215  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33096220 caaaatggttcagagtgtaaacttctataacgagaagaagaaatctatagctccaacaaactttcggagaacataggtatgttttcttccttgaatagtg 33096121  T
Q  216 tcttaccttacttactaccacttgagtaacataagtcatcgtaaactnnnnnnnnnnnnnnnnaagtggaggtgtcggagttcgaaccccagtcatgacg 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||| |||||||| ||||||||    
T  33096120 tcttaccttacttactaccacttgagtaacataagtcatcgtaaact------cacacacacaaagtggaggtgtcggagtttgaaccccaatcatgacg 33096027  T
Q  316 ttcgacctaacaaattcgtaatttttgtcagttga-tctggacttatgtgacnnnnnnnnctcttctctaataacaagaaaacatatatcagaagccaca 414  Q
    |||| |||||||| ||||| ||||||| ||||||| |  |||||||||||||        ||||||||||||||||||||||||||||| ||||||||||    
T  33096026 ttcggcctaacaatttcgtcatttttgccagttgagttaggacttatgtgac-aaaaaagctcttctctaataacaagaaaacatatattagaagccaca 33095928  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 333
Target Start/End: Original strand, 40878226 - 40878280
Alignment:
Q  279 aagtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcg 333  Q
    |||||||||| |||| ||||||||| || ||||||||||||||||||||| ||||    
T  40878226 aagtggaggtatcggggttcgaacctcaatcatgacgttcgacctaacaatttcg 40878280  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 350
Target Start/End: Complemental strand, 54923560 - 54923500
Alignment:
Q  290 tcggagttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttttgtcagttga 350  Q
    |||||||||||||||| |||||||||| ||||||||||| ||||  ||||||  |||||||    
T  54923560 tcggagttcgaaccccggtcatgacgtccgacctaacaatttcgacatttttaccagttga 54923500  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 333
Target Start/End: Complemental strand, 51053703 - 51053649
Alignment:
Q  279 aagtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcg 333  Q
    ||||| || |||||| |||||||||||  ||||||||||||||||||||| ||||    
T  51053703 aagtgaagttgtcggggttcgaaccccgatcatgacgttcgacctaacaatttcg 51053649  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 31812298 - 31812266
Alignment:
Q  279 aagtggaggtgtcggagttcgaaccccagtcat 311  Q
    ||||||||||||||||||||||||||| |||||    
T  31812298 aagtggaggtgtcggagttcgaaccccggtcat 31812266  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 350
Target Start/End: Original strand, 22792153 - 22792224
Alignment:
Q  279 aagtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttttgtcagttga 350  Q
    ||||||||||||||| ||||||||||| |||| ||||| ||||||||||| ||||  ||||||| |||||||    
T  22792153 aagtggaggtgtcggggttcgaacccctgtcaagacgtccgacctaacaatttcggcatttttgccagttga 22792224  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 350
Target Start/End: Complemental strand, 26526598 - 26526527
Alignment:
Q  279 aagtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttttgtcagttga 350  Q
    ||||||||||  ||||||||||||| | ||||||||||||| |||||||| ||||  ||||||| |||||||    
T  26526598 aagtggaggtaccggagttcgaacctcggtcatgacgttcggcctaacaatttcggtatttttgccagttga 26526527  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 328
Target Start/End: Original strand, 13542847 - 13542895
Alignment:
Q  279 aagtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaa 328  Q
    ||||||||||||||||||||||| ||| |||||||||| | |||||||||    
T  13542847 aagtggaggtgtcggagttcgaa-cccggtcatgacgtccaacctaacaa 13542895  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 362
Target Start/End: Complemental strand, 13849441 - 13849357
Alignment:
Q  279 aagtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttttgtcagttgatct-ggacttatg 362  Q
    ||||||||||||||| |||||||||||  ||| |||||  |||||||||| ||||  ||||||||||||||| || |||||||||    
T  13849441 aagtggaggtgtcggggttcgaaccccgatcaagacgtctgacctaacaatttcgacatttttgtcagttgagctaggacttatg 13849357  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 350
Target Start/End: Original strand, 22988034 - 22988105
Alignment:
Q  279 aagtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttttgtcagttga 350  Q
    |||| ||||| |||| |||||||| | ||||||||||||||||||||||| ||||  ||||||||| |||||    
T  22988034 aagtagaggtatcggggttcgaactctagtcatgacgttcgacctaacaatttcgacatttttgtcggttga 22988105  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 350
Target Start/End: Complemental strand, 22717183 - 22717112
Alignment:
Q  279 aagtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttttgtcagttga 350  Q
    |||| ||||| |||| |||||||| | | ||||||||||||||||||||| ||||  ||||||||| |||||    
T  22717183 aagtagaggtatcggggttcgaactctaatcatgacgttcgacctaacaatttcgacatttttgtcggttga 22717112  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 328
Target Start/End: Original strand, 27031857 - 27031906
Alignment:
Q  279 aagtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaa 328  Q
    ||||| ||||||||||||||||||| | |||||||||| |||||| ||||    
T  27031857 aagtgaaggtgtcggagttcgaaccacggtcatgacgtacgacctgacaa 27031906  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 326
Target Start/End: Complemental strand, 15540105 - 15540061
Alignment:
Q  282 tggaggtgtcggagttcgaaccccagtcatgacgttcgacctaac 326  Q
    |||||||| || ||||||||||||| |||| ||||||||||||||    
T  15540105 tggaggtgccgaagttcgaaccccaatcataacgttcgacctaac 15540061  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 362
Target Start/End: Complemental strand, 46343398 - 46343330
Alignment:
Q  295 gttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttttgtcagttgatct-ggacttatg 362  Q
    ||||||||||| |||||||||| || |||||||| ||||  | ||||||||||||| || |||||||||    
T  46343398 gttcgaaccccggtcatgacgtccggcctaacaatttcggcacttttgtcagttgagctaggacttatg 46343330  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 362
Target Start/End: Original strand, 7204551 - 7204635
Alignment:
Q  279 aagtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttttgtcagttgatct-ggacttatg 362  Q
    |||||||||| |||| ||||||||||| ||||||| ||||| |||||||| ||||  ||||||| ||||||| || |||||||||    
T  7204551 aagtggaggtatcggggttcgaaccccggtcatgatgttcggcctaacaatttcggcatttttgccagttgagctaggacttatg 7204635  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 350
Target Start/End: Complemental strand, 236639 - 236584
Alignment:
Q  295 gttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttttgtcagttga 350  Q
    ||||||||||| |||||||||| || |||||||| ||||  |||||||||||||||    
T  236639 gttcgaaccccggtcatgacgtccggcctaacaatttcgacatttttgtcagttga 236584  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 350
Target Start/End: Original strand, 11064322 - 11064377
Alignment:
Q  295 gttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttttgtcagttga 350  Q
    |||||||||||||||||| |||||||| ||| |||||||  |||||| ||||||||    
T  11064322 gttcgaaccccagtcatggcgttcgacttaataaattcgacatttttatcagttga 11064377  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 333
Target Start/End: Complemental strand, 40685611 - 40685560
Alignment:
Q  282 tggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcg 333  Q
    ||||||| |||||||||||||||| |||||||| | ||||||||||| ||||    
T  40685611 tggaggtatcggagttcgaaccccggtcatgacatccgacctaacaatttcg 40685560  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 340
Target Start/End: Complemental strand, 29511190 - 29511132
Alignment:
Q  282 tggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttt 340  Q
    ||||||| |||| ||||||||||| |||||||| |||| |||||||| ||||| |||||    
T  29511190 tggaggtatcggggttcgaaccccggtcatgacattcggcctaacaatttcgtcatttt 29511132  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 355
Target Start/End: Original strand, 3728369 - 3728444
Alignment:
Q  279 aagtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttttgtcagttgatctgg 355  Q
    |||||||||| |||| |||||||||||| ||||||| | ||||||||||| |||| |  ||||||||||||| ||||    
T  3728369 aagtggaggtatcggggttcgaaccccaatcatgacatccgacctaacaatttcg-atattttgtcagttgagctgg 3728444  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 350
Target Start/End: Original strand, 11098133 - 11098187
Alignment:
Q  295 gttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttttgtcagttga 350  Q
    |||||||||||||||||||| ||||||||||||| |||| |  |||||||||||||    
T  11098133 gttcgaaccccagtcatgacattcgacctaacaatttcg-atattttgtcagttga 11098187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 333
Target Start/End: Complemental strand, 4312218 - 4312164
Alignment:
Q  279 aagtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcg 333  Q
    ||||||||||  |||||||||||||||||||||| | | ||||||||||| ||||    
T  4312218 aagtggaggtaccggagttcgaaccccagtcatggcatccgacctaacaatttcg 4312164  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 348
Target Start/End: Complemental strand, 31291289 - 31291235
Alignment:
Q  294 agttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttttgtcagtt 348  Q
    ||||||||||||  |||||||||||| |||||||| ||||  |||||||||||||    
T  31291289 agttcgaaccccgatcatgacgttcggcctaacaatttcggcatttttgtcagtt 31291235  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 333
Target Start/End: Complemental strand, 36442391 - 36442337
Alignment:
Q  279 aagtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcg 333  Q
    ||||||||||  |||||||||||||||| ||||||| | ||||||||||| ||||    
T  36442391 aagtggaggtaccggagttcgaaccccaatcatgacatccgacctaacaatttcg 36442337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 333
Target Start/End: Original strand, 43149421 - 43149474
Alignment:
Q  279 aagtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcg 333  Q
    |||||||||||||||||||||||||  ||| ||||||| ||||||||||| ||||    
T  43149421 aagtggaggtgtcggagttcgaaccttagt-atgacgtccgacctaacaatttcg 43149474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 340
Target Start/End: Complemental strand, 37817461 - 37817400
Alignment:
Q  279 aagtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttt 340  Q
    |||||||||| |||| ||||||||||| |||||| | | ||||||||||| ||||| |||||    
T  37817461 aagtggaggtatcggggttcgaaccccggtcatggcatccgacctaacaatttcgtcatttt 37817400  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 366
Target Start/End: Complemental strand, 24333426 - 24333338
Alignment:
Q  279 aagtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttttgtcagttgatct-ggacttatgtgac 366  Q
    ||||||||||   ||||||||||||||  |||||||| ||| |||||||| ||||  |||||||| |||||| || |||||||||||||    
T  24333426 aagtggaggtactggagttcgaaccccgatcatgacgctcggcctaacaatttcgacatttttgtaagttgagctaggacttatgtgac 24333338  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 350
Target Start/End: Original strand, 6328217 - 6328288
Alignment:
Q  279 aagtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttttgtcagttga 350  Q
    |||||||||| |||| |||||||||| ||||||||||| | ||||||||| || |  ||||||| |||||||    
T  6328217 aagtggaggtatcggggttcgaaccctagtcatgacgtccaacctaacaattttgacatttttgccagttga 6328288  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 350
Target Start/End: Complemental strand, 35289917 - 35289860
Alignment:
Q  293 gagttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttttgtcagttga 350  Q
    |||||||||||||| |||||||||  |||||||||| |||   |||||||||||||||    
T  35289917 gagttcgaaccccaatcatgacgtctgacctaacaatttcagcatttttgtcagttga 35289860  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 350
Target Start/End: Complemental strand, 39417527 - 39417457
Alignment:
Q  279 aagtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttttgtcagttga 350  Q
    |||||||| | |||||||||||||||| |||||||| | || |||||||| ||||  |||||||||||||||    
T  39417527 aagtggagatatcggagttcgaacccc-gtcatgacatccggcctaacaatttcggtatttttgtcagttga 39417457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 316
Target Start/End: Complemental strand, 22999160 - 22999123
Alignment:
Q  279 aagtggaggtgtcggagttcgaaccccagtcatgacgt 316  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  22999160 aagtggaggtgtcggggttcgaaccccggtcatgacgt 22999123  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 362
Target Start/End: Original strand, 19359 - 19440
Alignment:
Q  282 tggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcgtaatttttgtcagttgatct-ggacttatg 362  Q
    ||||||| |||| |||||||||||| ||||||||| || |||||||| |||   ||||||| ||||||| || |||||||||    
T  19359 tggaggtatcggggttcgaaccccaatcatgacgtccggcctaacaatttcaacatttttgccagttgaactaggacttatg 19440  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 333
Target Start/End: Original strand, 31242034 - 31242087
Alignment:
Q  280 agtggaggtgtcggagttcgaaccccagtcatgacgttcgacctaacaaattcg 333  Q
    ||||||||||||||  |||||||||| |||||||||| || |||||||| ||||    
T  31242034 agtggaggtgtcgggattcgaaccccggtcatgacgtccggcctaacaatttcg 31242087  T

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