View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4622_low_2 (Length: 375)
Name: NF4622_low_2
Description: NF4622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4622_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 44 - 358
Target Start/End: Original strand, 17538380 - 17538685
Alignment:
| Q |
44 |
tcaatgaatggaaaaacagtagggttatgcaacaaaaattaaaacaaataaactaaggctttttaagaacggagaaatcaaatcgttggttgtttcgatc |
143 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17538380 |
tcaatgaatggaaaaacagtagggttatgcaacaaaaattaaaacaaataaactaaggctttttaagaacggagaaatcaaatcgttggttgtttcgatc |
17538479 |
T |
|
| Q |
144 |
ccatcgaagaccgatttgatcgtctttcttgagttcccttctgttaacaaactctttggtccaagtcttggtgaagacgtaactttttgccgaaggccaa |
243 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
17538480 |
ccatcgaagaacgatttgatcgtctttcttgagttcccttctgttaacaaactctttggtccaagtattggtgaagacgtaactttttgccgaaggccaa |
17538579 |
T |
|
| Q |
244 |
tacttgaaaactacagaatgaggagatttagtgtcaatgtcccagacttgaacttggattcctccttttccgaaagcagctgcagtaccatccaacaaaa |
343 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
17538580 |
tacttgaaaactacagaatgaggagatttggtgtcaatgtcccagacttgaacttggactcctccttttccgaaagc---------accatccaacaaaa |
17538670 |
T |
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| Q |
344 |
ccggaacaacaaatt |
358 |
Q |
| |
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||||||||||||||| |
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| T |
17538671 |
ccggaacaacaaatt |
17538685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 91 - 358
Target Start/End: Complemental strand, 17694076 - 17693809
Alignment:
| Q |
91 |
ataaactaaggctttttaagaacggagaaatcaaatcgttggttgtttcgatcccatcgaagaccgatttgatcgtctttcttgagttcccttctgttaa |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
17694076 |
ataaactaaggctttttaagaacggagaaatcaaatcgttggttgtttcgatcccatcgaagagcgatttgatcgtctttcttgagttcccttctgttaa |
17693977 |
T |
|
| Q |
191 |
caaactctttggtccaagtcttggtgaagacgtaactttttgccgaaggccaatacttgaaaactacagaatgaggagatttagtgtcaatgtcccagac |
290 |
Q |
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| T |
17693976 |
caaactctttggtccaagttttggtgaagacgtaactttttgccgaaggccaatacttgaaaactacagaatgaggagatttggtgtcaatgtcccagac |
17693877 |
T |
|
| Q |
291 |
ttgaacttggattcctccttttccgaaagcagctgcagtaccatccaacaaaaccggaacaacaaatt |
358 |
Q |
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| T |
17693876 |
ttgaacttggactcctccttttccgaaatcagctgcagcaccatccaacaaaaccggaacaacaaatt |
17693809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 106 - 358
Target Start/End: Complemental strand, 17619914 - 17619665
Alignment:
| Q |
106 |
ttaagaacggagaaatcaaatcgttggttgtttcgatcccatcgaagaccgatttgatcgtctttcttgagttcccttctgttaacaaactctttggtcc |
205 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
17619914 |
ttaagaacggagaaatcaaatcgttggttgttttgatcccatcgaagaccgatttgatcgcctttcttcagttcccttctgttaacaaactctttggtcc |
17619815 |
T |
|
| Q |
206 |
aagtcttggtgaagacgtaactttttgccgaaggccaatacttgaaaactacagaatgaggagatttagtgtcaatgtcccagacttgaacttggattcc |
305 |
Q |
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||||||||||||||||||| |||||||||| ||| |||| ||||||||| |||| |||||||||| |||||||||||||||||||||||||||| | |
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| T |
17619814 |
aagtcttggtgaagacgtacatttttgccgagtgccgatacatgaaaactatagaaagaggagatttggtgtcaatgtcccagacttgaacttgga---c |
17619718 |
T |
|
| Q |
306 |
tccttttccgaaagcagctgcagtaccatccaacaaaaccggaacaacaaatt |
358 |
Q |
| |
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||||| | || ||||||||||| |||||||||||| ||||||| ||||||| |
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| T |
17619717 |
tccttcttggagagcagctgcagcaccatccaacaagaccggaatgacaaatt |
17619665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 17694178 - 17694102
Alignment:
| Q |
15 |
atcaatttccccaataccaattacatccttcaatgaatggaaaaacagtagggttatgcaacaaaaattaaaacaaa |
91 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||| |
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| T |
17694178 |
atcaatctccccaataacaattacatccttcaatgaatggaaaaacagtaggattaagcaagaaaaattaaaacaaa |
17694102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 17184759 - 17184871
Alignment:
| Q |
109 |
agaacggagaaatcaaatcgttggttgtttcgatcccatcgaagaccgatttgatcgtctttcttgagttcccttctgttaacaaactctttggtccaag |
208 |
Q |
| |
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|||||||||||||||||||| | |||| | ||||||| ||||| |||||||||||| |||| || | || |||||| ||||||||||||| | |||||| |
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| T |
17184759 |
agaacggagaaatcaaatcggttgttgagttgatcccagcgaaggccgatttgatcgcctttattcaatttccttcttttaacaaactcttcgatccaag |
17184858 |
T |
|
| Q |
209 |
tcttggtgaagac |
221 |
Q |
| |
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|||| |||||||| |
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| T |
17184859 |
tcttcgtgaagac |
17184871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 221
Target Start/End: Complemental strand, 17195681 - 17195575
Alignment:
| Q |
115 |
gagaaatcaaatcgttggttgtttcgatcccatcgaagaccgatttgatcgtctttcttgagttcccttctgttaacaaactctttggtccaagtcttgg |
214 |
Q |
| |
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|||||||||||||| | |||| | ||||||| ||||| ||||||||||| |||| || | || |||||| |||| |||||||| | |||||||||| | |
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| T |
17195681 |
gagaaatcaaatcggttgttgagttgatcccagcgaaggccgatttgatcacctttattcaatttccttcttttaataaactcttcgatccaagtcttcg |
17195582 |
T |
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| Q |
215 |
tgaagac |
221 |
Q |
| |
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||||||| |
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| T |
17195581 |
tgaagac |
17195575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 286
Target Start/End: Complemental strand, 17809143 - 17809049
Alignment:
| Q |
192 |
aaactctttggtccaagtcttggtgaagacgtaactttttgccgaaggccaatacttgaaaactacagaatgaggagatttagtgtcaatgtccc |
286 |
Q |
| |
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|||||||||| |||| | |||||||| ||||| || | ||| |||| ||| ||||||||||| |||||| | |||||||||||||||||||| |
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| T |
17809143 |
aaactctttgatccattttttggtgaaaacgtagctatgtgctgaagtccatatcttgaaaactagagaatgggaagatttagtgtcaatgtccc |
17809049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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