View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4622_low_5 (Length: 346)
Name: NF4622_low_5
Description: NF4622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4622_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 276 - 328
Target Start/End: Complemental strand, 17363976 - 17363924
Alignment:
| Q |
276 |
gcggcgaccaccccaacctctacagcgaggtccacgtctaaatcggcaatcat |
328 |
Q |
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| T |
17363976 |
gcggcgaccaccccaacctctacagcgaggtccacgtctaaatcgacaatcat |
17363924 |
T |
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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 276 - 325
Target Start/End: Complemental strand, 17368447 - 17368398
Alignment:
| Q |
276 |
gcggcgaccaccccaacctctacagcgaggtccacgtctaaatcggcaat |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
17368447 |
gcggcgaccaccccaacctctacagcgaggtccacgtctatatcggcaat |
17368398 |
T |
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