View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4622_low_6 (Length: 335)

Name: NF4622_low_6
Description: NF4622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4622_low_6
NF4622_low_6
[»] chr4 (2 HSPs)
chr4 (21-307)||(6457121-6457407)
chr4 (1-29)||(6458209-6458237)
[»] chr5 (3 HSPs)
chr5 (126-309)||(18043753-18043935)
chr5 (255-309)||(26270449-26270503)
chr5 (107-159)||(26270295-26270347)
[»] chr3 (2 HSPs)
chr3 (245-301)||(32466237-32466293)
chr3 (245-309)||(7460650-7460714)
[»] chr1 (2 HSPs)
chr1 (266-309)||(36977093-36977136)
chr1 (266-309)||(15858656-15858698)
[»] chr6 (3 HSPs)
chr6 (245-309)||(24319828-24319892)
chr6 (277-309)||(13183413-13183445)
chr6 (273-309)||(26270859-26270895)
[»] chr8 (1 HSPs)
chr8 (266-309)||(24987957-24988000)
[»] chr2 (2 HSPs)
chr2 (274-309)||(12529838-12529873)
chr2 (274-307)||(32620448-32620481)
[»] scaffold0330 (1 HSPs)
scaffold0330 (245-309)||(1177-1241)


Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 21 - 307
Target Start/End: Complemental strand, 6457407 - 6457121
Alignment:
Q  21 tataaaatattatcatgttggtggactaagcttaactggttgcagcttatggtcaggaatgtcctcagggtagagtttataatgtaaatggacaaccata 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6457407 tataaaatattatcatgttggtggactaagcttaactggttgcagcttatggtcaggaatgtcctcagggtagagtttataatgtaaatggacaaccata 6457308  T
Q  121 ttccgtctaccttatcaaggaaaaagaataaagtttataatacaacatttgataaggagtgaccaggggtatcctcagaatcaccgtctgcgtcccctat 220  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||    
T  6457307 ttccgtctaccttatcaaggaaaaagaataaagtttataatgcaacatttgaaaaggagtgaccaggggtatcctcaaaatcaccgtttgcgtcccctat 6457208  T
Q  221 ttttaggtttgattgacattcatcaggtatgtcccactccctaagattcctaaaagcattaaggcttttgcatataaaaattaaata 307  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  6457207 ttttaggtttgattgacattcatcaggtatgtcacactccctaagattcctaaaagcattaaagcttttgcatataaaatttaaata 6457121  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 6458237 - 6458209
Alignment:
Q  1 tggaccaaaattatgaagtatataaaata 29  Q
    |||||||||||||||||||||||||||||    
T  6458237 tggaccaaaattatgaagtatataaaata 6458209  T

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Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 126 - 309
Target Start/End: Original strand, 18043753 - 18043935
Alignment:
Q  126 tctaccttatcaaggaaaaagaataaagtttataatacaacatttgataaggagtgaccaggggtatcctcagaatcaccgtctgcgtcccctattttta 225  Q
    ||||||||| ||||| ||| ||||||| |||||||| |||| ||||| || ||| ||| |||||| ||||||| |||||||| |||||||||| ||| ||    
T  18043753 tctacctta-caagggaaaggaataaattttataatgcaacgtttgagaaagagagactaggggtgtcctcaggatcaccgtatgcgtcccctgtttcta 18043851  T
Q  226 ggtttgattgacattcatcaggtatgtcccactccctaagattcctaaaagcattaaggcttttgcatataaaaattaaataga 309  Q
     |||  ||| | |||||  | ||||||| |||||| || || |||||||||||||||| ||||||| |||  ||||||||||||    
T  18043852 tgttcaattaaaattcactaagtatgtcacactccatatgactcctaaaagcattaagacttttgcttatgtaaattaaataga 18043935  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 26270449 - 26270503
Alignment:
Q  255 cactccctaagattcctaaaagcattaaggcttttgcatataaaaattaaataga 309  Q
    ||||| ||| ||||| |||||||||||||  ||||||||||||||||||||||||    
T  26270449 cactctctatgattcttaaaagcattaagatttttgcatataaaaattaaataga 26270503  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 159
Target Start/End: Original strand, 26270295 - 26270347
Alignment:
Q  107 aatggacaaccatattccgtctaccttatcaaggaaaaagaataaagtttata 159  Q
    |||||||||||||||  || ||| |||| |||||| |||||||||||||||||    
T  26270295 aatggacaaccatatgtcgcctaacttaacaaggagaaagaataaagtttata 26270347  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 32466293 - 32466237
Alignment:
Q  245 aggtatgtcccactccctaagattcctaaaagcattaaggcttttgcatataaaaat 301  Q
    ||||||||| ||||||| | ||||||||||||||||||| | |||||||||||||||    
T  32466293 aggtatgtcacactccccatgattcctaaaagcattaagccatttgcatataaaaat 32466237  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 7460714 - 7460650
Alignment:
Q  245 aggtatgtcccactccctaagattcctaaaagcattaaggcttttgcatataaaaattaaataga 309  Q
    ||||||||| |||| ||||  |||| |||||||||| || ||| ||||||||||| |||||||||    
T  7460714 aggtatgtcacactgcctagaattcataaaagcattcagacttgtgcatataaaatttaaataga 7460650  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 36977093 - 36977136
Alignment:
Q  266 attcctaaaagcattaaggcttttgcatataaaaattaaataga 309  Q
    |||| ||||||||||||| |||||||||||||||||||||||||    
T  36977093 attcttaaaagcattaagccttttgcatataaaaattaaataga 36977136  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 15858656 - 15858698
Alignment:
Q  266 attcctaaaagcattaaggcttttgcatataaaaattaaataga 309  Q
    |||| ||||||||||||| |||||||||||||||||||||||||    
T  15858656 attcgtaaaagcattaag-cttttgcatataaaaattaaataga 15858698  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 24319828 - 24319892
Alignment:
Q  245 aggtatgtcccactccctaagattcctaaaagcattaaggcttttgcatataaaaattaaataga 309  Q
    ||||||||| |||  |||||  ||| ||||||||||| | |||||||||||||||||||||||||    
T  24319828 aggtatgtcacacatcctaaacttcataaaagcattaggacttttgcatataaaaattaaataga 24319892  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 309
Target Start/End: Original strand, 13183413 - 13183445
Alignment:
Q  277 cattaaggcttttgcatataaaaattaaataga 309  Q
    ||||||| |||||||||||||||||||||||||    
T  13183413 cattaagccttttgcatataaaaattaaataga 13183445  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 26270895 - 26270859
Alignment:
Q  273 aaagcattaaggcttttgcatataaaaattaaataga 309  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  26270895 aaagcattaagccttttgcatataaaaattagataga 26270859  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 24988000 - 24987957
Alignment:
Q  266 attcctaaaagcattaaggcttttgcatataaaaattaaataga 309  Q
    |||| ||||| ||||||||| |||||||||||||||||||||||    
T  24988000 attcgtaaaaacattaaggcctttgcatataaaaattaaataga 24987957  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 274 - 309
Target Start/End: Original strand, 12529838 - 12529873
Alignment:
Q  274 aagcattaaggcttttgcatataaaaattaaataga 309  Q
    |||||||||| |||||||||||||||||||||||||    
T  12529838 aagcattaagacttttgcatataaaaattaaataga 12529873  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 307
Target Start/End: Original strand, 32620448 - 32620481
Alignment:
Q  274 aagcattaaggcttttgcatataaaaattaaata 307  Q
    |||||||||| |||||||||||||||||||||||    
T  32620448 aagcattaagacttttgcatataaaaattaaata 32620481  T

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Target: scaffold0330 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 1241 - 1177
Alignment:
Q  245 aggtatgtcccactccctaagattcctaaaagcattaaggcttttgcatataaaaattaaataga 309  Q
    ||||||||| ||||||||| ||||  | |||||||| |  |||||||||| ||||||||||||||    
T  1241 aggtatgtcacactccctaggatttgtgaaagcattgaaccttttgcatacaaaaattaaataga 1177  T

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