View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4623-Insertion-1 (Length: 564)
Name: NF4623-Insertion-1
Description: NF4623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4623-Insertion-1 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 455; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 32 - 564
Target Start/End: Original strand, 38540919 - 38541451
Alignment:
| Q |
32 |
ttgtttttggaagagaaatgaatgagtcctttattaaaatttgagatggtgcaacttatttagtcnnnnnnnnnttcgacaaattgtgcggtcacggttc |
131 |
Q |
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| T |
38540919 |
ttgtttttggaagagaaatgaatgagtcctttattaaaatttgacatggtgcaacttatttagtcaaaaaaaaattcgacaaattgtgcggtcacggttc |
38541018 |
T |
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| Q |
132 |
ctgatcagtgcgtattcaatcacgagatcttctttaccataaatgtgccagacatgggcatttgcttagtacaattttgtttgcatttacatgtctttgt |
231 |
Q |
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| T |
38541019 |
ctgatcagtgcgtattcaatcacgagatcttctttaccataaatgtgcctgacatgggcatttgcttagtacaattttgtttgcatttacatgtctttgt |
38541118 |
T |
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| Q |
232 |
ttggaaatatttgttttccttatgaagtacctatatgctttcggtttcaaataccaatagcggcatatgatacgttgtcataggtttggcaccgcttttg |
331 |
Q |
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| T |
38541119 |
ttggaaatatttgttttccttatgaagtacctatatgctttcggtttcaaataccaatagcggcatatgatatgttgtcataggtttggcaccgcttttg |
38541218 |
T |
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| Q |
332 |
gtcatgttttctatattgtaatttgtaaacagggccgtcatgctgtgtacttcggtgcgagggagctatgatcaatgttatcaatagtggattgcagaaa |
431 |
Q |
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| T |
38541219 |
gtcatgttttctatattgtaatttgtaaacagggccgtcatgctgtgtacttcggtgagagggagctatgatcaatgttatcaatagtggattgcagaaa |
38541318 |
T |
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| Q |
432 |
atagcggaatgccaaaaatacgcaatgtgaaatagcagacagtttcgcgggcaattgtgtcggacagatgccagttttgtccttctaatannnnnnnnna |
531 |
Q |
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| T |
38541319 |
atagcggaatgccaaaaatacgcaatgtgaaatagcagacagtttcgcgggcaattgtgtcggacagatgccagttttgtccttttaatattttttttta |
38541418 |
T |
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| Q |
532 |
ctaatagtgagaaatttatcttttcaacattca |
564 |
Q |
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| T |
38541419 |
ctaatagggagaaatttatcttttcaacattca |
38541451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 440
Target Start/End: Original strand, 10258195 - 10258228
Alignment:
| Q |
407 |
tgttatcaatagtggattgcagaaaatagcggaa |
440 |
Q |
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| T |
10258195 |
tgttatcaacagtggattgcagaaaatagcggaa |
10258228 |
T |
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