View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4623-Insertion-2 (Length: 444)
Name: NF4623-Insertion-2
Description: NF4623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4623-Insertion-2 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 165 - 444
Target Start/End: Complemental strand, 6386832 - 6386553
Alignment:
| Q |
165 |
actgtgcagcttttcatttaaattatagctgctattagaaaatgcttcctgaatttcaatctcacaaaactctttgcattattggatcgtaatcaagcga |
264 |
Q |
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| T |
6386832 |
actgtgcagcttttcatttaaattatagctgctattagaaaatgcttcctgaatttcaatctcacaaaactcttaggattattggatcgtaatcaagcga |
6386733 |
T |
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| Q |
265 |
atcacatttgaaaaataaataaataacttatttgcaaaactcttgtgaatatttctatcatgaggtttgtcaacaaacagcgatatcgcatcttcgataa |
364 |
Q |
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| T |
6386732 |
atcacatttgaaaaataaataaataacttatttgcaaaactcttgtgaatatttctatcatgaggtttgtcaacaaacagtgatatcgcatcttcgataa |
6386633 |
T |
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| Q |
365 |
acatccaaaagtagtcttgtgccactcacaggaatgtccatctaccatttcaatttccctattttcattgctttcatcta |
444 |
Q |
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| T |
6386632 |
acatccaaaagtagtcttgtgcctctcacaggaatgtccatctaccatttcaatttccctattttcattgctttcatcta |
6386553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 6 - 102
Target Start/End: Complemental strand, 6386991 - 6386895
Alignment:
| Q |
6 |
cattatcatcatgcattgactttcaccgagttgcgagtgctcttcggatttatgatgtattgatttgccaagtagattgtgtcaaatatacagcaac |
102 |
Q |
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| T |
6386991 |
cattatcatcatgcattgactttcaccaagttgcgagtgctcttcggatctatgatgtattgatttgccaagtagattgtgtcaaatatacagcaac |
6386895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 442
Target Start/End: Original strand, 6837000 - 6837089
Alignment:
| Q |
352 |
gcatcttcgataaacatccaaaagtagtcttgtgccactcacaggaatgtccatctaccatttcaatttccctattttcattgctttcatc |
442 |
Q |
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| T |
6837000 |
gcatctttgataaacatcagaaagtaatcttgtgcctctgacaggaacgtc-atctaccatttcattttcccaatcttcaatgttttcatc |
6837089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 423
Target Start/End: Complemental strand, 32527601 - 32527516
Alignment:
| Q |
337 |
acaaacagcgatatcgcatcttcgataaacatccaaaagtagtcttgtgccactcacaggaatgtccatctaccatttcaatttccc |
423 |
Q |
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| T |
32527601 |
acaaacagcaatgttgcatctttgataaacatcagaaagtaatcttgtgcccctgacaggaacatc-atctaccatttcattttccc |
32527516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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