View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4623-Insertion-3 (Length: 425)
Name: NF4623-Insertion-3
Description: NF4623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4623-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 8 - 409
Target Start/End: Original strand, 36042908 - 36043317
Alignment:
| Q |
8 |
gtgatgaatatggagaaagtgtgtgttggaaagttgataaaagtgctagagggaagattatggaatgggaaattaggggttggatatggttaacttattt |
107 |
Q |
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| T |
36042908 |
gtgatgaatatggagaaagtgtgtgttggaaagttgataaaagtgctagagggaagattatggaatgggaaattaggggttggatatggttaacttattt |
36043007 |
T |
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| Q |
108 |
gcctaataaatataggacattctaccatgaaactaggaggttggagtttagggaaattgtgcatctcaatattccttagcttaggaataacgcagaatat |
207 |
Q |
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| T |
36043008 |
gcctaataaatataggacattctaccatgaaactaggaggttggagtttagggaaattgtgcatctcaatattccttagcttaggaataacgcagaatat |
36043107 |
T |
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| Q |
208 |
gaataaattactttagctatcatatgatgaaaaatataatttgtattggtattgttgcgattcaatattattttaacaagtaatattattgtaattcttt |
307 |
Q |
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| T |
36043108 |
gaataaattactttagctaccatatgatgaaaaatataatttgtattggtattgttgcgattcaatattattttaacaagtaatattattgtaattcttt |
36043207 |
T |
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| Q |
308 |
nnnnnnnnnnnnggtaatattattgtaaaataagttgttagacatttgta-----------gcaatataatcatatagttgatagaaacttgattttaaa |
396 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||| |
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| T |
36043208 |
---caataaaaaggtaattttattgtaaaataagttgttagacatttgtagcaatcccaatgcaatgtaatcatataattgatagaaacttgattttaaa |
36043304 |
T |
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| Q |
397 |
ctggttttcaaat |
409 |
Q |
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| T |
36043305 |
ctggttttcaaat |
36043317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 167
Target Start/End: Original strand, 32318146 - 32318305
Alignment:
| Q |
8 |
gtgatgaatatggagaaagtgtgtgttggaaagttgataaaagtgctagagggaagattatggaatgggaaattaggggttggatatggttaacttattt |
107 |
Q |
| |
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||||||||||||| ||||| ||||| |||||||| |||||| | |||| ||||| | ||||| ||||| || || |||||||| ||||||||||||| |
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| T |
32318146 |
gtgatgaatatggtgaaagagtgtggtggaaagtggataaaggagctattgggaaaacaatggagtgggagataagaggttggatttggttaacttattg |
32318245 |
T |
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| Q |
108 |
gcctaataaatataggacattctaccatgaaactaggaggttggagtttagggaaattgt |
167 |
Q |
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||| || ||| || || ||| |||||||||||||| |||||||| | |||||||| |
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| T |
32318246 |
gccaaacaaacgagtaacgttgtacaatgaaactaggaggatggagtttcgtgaaattgt |
32318305 |
T |
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