View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4623-Insertion-4 (Length: 414)
Name: NF4623-Insertion-4
Description: NF4623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4623-Insertion-4 |
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| [»] chr6 (1 HSPs) |
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| [»] chr7 (3 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 27 - 414
Target Start/End: Original strand, 31943770 - 31944177
Alignment:
| Q |
27 |
aagaaatgaaccataaaacaaacaattttcagcatgaaatcatgtcaattaaaatataatttccaacatgaagaaataaaccctgaaaacaaaattttca |
126 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31943770 |
aagaaatgaaccataaaacacacaattttcagcaagaaatcatgtcaattaaaatataatttccaacatgaagaaataaaccctgaaaacaaaattttca |
31943869 |
T |
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| Q |
127 |
acatgtgaagggataaaccct--nnnnnnnnnnnctttcaacat-aaatcaaacaaaataacataaacaccgaattttcaacatgcaatcatagaaataa |
223 |
Q |
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| T |
31943870 |
acatatgaagaaataaaccctaaaaaaaaaaaaactttcaacataaaatcaaacaaaataacataaacaccgaattttcaacatgtaatcatagaaataa |
31943969 |
T |
|
| Q |
224 |
atcctaaaacagcaaacattcaaca---nnnnnnnnaaggaccaaactcatgaaatcaagtaaaatataagaaaacac-----aaattta---------t |
306 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||| || | |
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| T |
31943970 |
atcctaaaacagcaaacattcaacattttttttttgaaggactaaactcatgaaatcaagtaaaatataagaaaacacaagtaaaatataagcaaacatt |
31944069 |
T |
|
| Q |
307 |
caacattgaatnnnnnnnnntagaaaccttgacataagcattatcgtccagcttatacaaaatcccatcaactttcgcttcacggtagtgaaacttcgcc |
406 |
Q |
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| T |
31944070 |
caacattgaataaaaaaaaatagaaaccttgacataagcattatcgtccagcttatacaaaatcccatcaactttcgcttcacggtagtgaaacttcgcc |
31944169 |
T |
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| Q |
407 |
ttcaaact |
414 |
Q |
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| T |
31944170 |
ttgaaact |
31944177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 269 - 414
Target Start/End: Original strand, 1342060 - 1342206
Alignment:
| Q |
269 |
catgaaatcaagtaaaatataagaaaa-cacaaatttatcaacattgaatnnnnnnnnntagaaaccttgacataagcattatcgtccagcttatacaaa |
367 |
Q |
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| T |
1342060 |
catgaaataaagtaaaataaaacaaaagcacaaatttatcaacatttaataaaataaaatagaaaccttgacataagcattatcctccagcttatataaa |
1342159 |
T |
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| Q |
368 |
atcccatcaactttcgcttcacggtagtgaaacttcgccttcaaact |
414 |
Q |
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| T |
1342160 |
atcccatcaaccttcgcttcatgatagtgaaacttcgccttcaaact |
1342206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 1341862 - 1341981
Alignment:
| Q |
13 |
accaaattttccacaagaaatgaaccataaaacaaacaattttcagcatgaaatcatgtc-aattaaaatataatttccaacatgaagaaataaaccct- |
110 |
Q |
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||||||| |||||||||||||||||||||||||| |||||||| |||| ||||||||||| || ||||| |||||||||||| ||||||||||||||| |
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| T |
1341862 |
accaaatattccacaagaaatgaaccataaaacacacaattttaagcaagaaatcatgtcaaagaaaaatttaatttccaacaagaagaaataaacccta |
1341961 |
T |
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| Q |
111 |
gaaaacaaaattttcaacat |
130 |
Q |
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| T |
1341962 |
aaaaacaaaattttgaacat |
1341981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 1341983 - 1342052
Alignment:
| Q |
169 |
aaatcaaacaaaataacataa-acaccgaattttcaacatgcaatcatagaaataaatcctaaaacagcaaa |
239 |
Q |
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| T |
1341983 |
aaatcaaacaaaataacataatacac--aattttcaacatgcaatcaaagaaataaaccctaaaacaccaaa |
1342052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 327 - 414
Target Start/End: Original strand, 9394578 - 9394665
Alignment:
| Q |
327 |
tagaaaccttgacataagcattatcgtccagcttatacaaaatcccatcaactttcgcttcacggtagtgaaacttcgccttcaaact |
414 |
Q |
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| T |
9394578 |
tagaaaccttgacataagcattatcctccagcttatataaaatcccatcaaccttggcttcacggtagtgaaactttgccttcaaact |
9394665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 9394445 - 9394534
Alignment:
| Q |
160 |
tttcaacataaa-tcaaacaaaataacataaacaccgaattttcaacatgcaatcatagaaataaatcctaaaacagcaaacattcaaca |
248 |
Q |
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| T |
9394445 |
tttcaacataaaatcaaacaaaataacataaaaacacagttgccaacatgaaatcaaagaaataaaccctaaaacatcaaattttcaaca |
9394534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 327 - 414
Target Start/End: Original strand, 35535403 - 35535490
Alignment:
| Q |
327 |
tagaaaccttgacataagcattatcgtccagcttatacaaaatcccatcaactttcgcttcacggtagtgaaacttcgccttcaaact |
414 |
Q |
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|||||||||||||||||||||||| ||||| ||||| | || |||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
35535403 |
tagaaaccttgacataagcattattatccagattatatataaccccatcaactttcgcttcacggtaatgaaactacgccttcaaact |
35535490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 331 - 410
Target Start/End: Original strand, 5644299 - 5644378
Alignment:
| Q |
331 |
aaccttgacataagcattatcgtccagcttatacaaaatcccatcaactttcgcttcacggtagtgaaacttcgccttca |
410 |
Q |
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|||||| |||||||||||||| | ||||||||| | || ||||||||| ||| |||||||||| |||||||||||||||| |
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| T |
5644299 |
aaccttaacataagcattatcattcagcttatatataaccccatcaacattcacttcacggtaatgaaacttcgccttca |
5644378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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