View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4623-Insertion-5 (Length: 348)
Name: NF4623-Insertion-5
Description: NF4623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4623-Insertion-5 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 8 - 328
Target Start/End: Original strand, 758353 - 758673
Alignment:
| Q |
8 |
ttatcatcatgttgtgtttctcactttggtttcttaacaaaataaattagggggaagtgttgtagtatgttattggtaatgatatcagaaattgtaatga |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
758353 |
ttatcatcatgttgtgtttctcactttggtttcttaacaaaataaattagggggatgtgttgtagtatgttattggtaatgatatcacaaattgtaatga |
758452 |
T |
|
| Q |
108 |
ttaaggttgttgttaataattaatatattaattatgatgactcatggaggctggatcttagttatgctaatcaaattaattaattaatcaatcattccaa |
207 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
758453 |
ttaaggttgttgttgataattaatatattaattatgatgactcatggaggctagatcttagttatgctaatcaaattaattaattaatcaatcattccaa |
758552 |
T |
|
| Q |
208 |
catgtatttatgctaaaatcttaatgttcatgagaagaatgaaataagaagtgataaactaaaacagatcaacaagaggaatcaaaaagaaaagaaaata |
307 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
758553 |
catgtatttatgctagaatcttaatgttcatgagaagaatgaaataagaagtgataaactaaaacagatcaacaagaggaatcaaaaagaaaagaaaata |
758652 |
T |
|
| Q |
308 |
tatattacttggtaggtgtga |
328 |
Q |
| |
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||||||||||||||||||||| |
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|
| T |
758653 |
tatattacttggtaggtgtga |
758673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 8 - 326
Target Start/End: Complemental strand, 36989018 - 36988700
Alignment:
| Q |
8 |
ttatcatcatgttgtgtttctcactttggtttcttaacaaaataaattagggggaagtgttgtagtatgttattggtaatgatatcagaaattgtaatga |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36989018 |
ttatcatcatgttgtgtttctcactttggtttcttaacaaattaaattacggggatgtgttgtagtatgttattggtaatgatatcacaaattgtaatga |
36988919 |
T |
|
| Q |
108 |
ttaaggttgttgttaataattaatatattaattatgatgactcatggaggctggatcttagttatgctaatcaaattaattaattaatcaatcattccaa |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
36988918 |
ttaaggttgttgttaataattaatatattaattatgatgactcatggaggctagatcttagttatgctaatcaaattaattaattaatcaattattccaa |
36988819 |
T |
|
| Q |
208 |
catgtatttatgctaaaatcttaatgttcatgagaagaatgaaataagaagtgataaactaaaacagatcaacaagaggaatcaaaaagaaaagaaaata |
307 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
36988818 |
catgtatttatgctagaatcttaatgttcatgagaagaatgaaataagaagtgataaactaaaacagatcaacaagaggaattaaaaagaaaataaaata |
36988719 |
T |
|
| Q |
308 |
tatattacttggtaggtgt |
326 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
36988718 |
tatattacttggtaggtgt |
36988700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 8 - 326
Target Start/End: Complemental strand, 37014457 - 37014139
Alignment:
| Q |
8 |
ttatcatcatgttgtgtttctcactttggtttcttaacaaaataaattagggggaagtgttgtagtatgttattggtaatgatatcagaaattgtaatga |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
37014457 |
ttatcatcatgttgtgtttctcactttggtttcttaacaaattaaattacggggatgtgttgtagtatgttattggtaatgatatcacaaattgtaatga |
37014358 |
T |
|
| Q |
108 |
ttaaggttgttgttaataattaatatattaattatgatgactcatggaggctggatcttagttatgctaatcaaattaattaattaatcaatcattccaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
37014357 |
ttaaggttgttgttaataattaatatattaattatgatgactcatggaggctagatcttagttatgctaatcaaattaattaattaatcaattattccaa |
37014258 |
T |
|
| Q |
208 |
catgtatttatgctaaaatcttaatgttcatgagaagaatgaaataagaagtgataaactaaaacagatcaacaagaggaatcaaaaagaaaagaaaata |
307 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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|
| T |
37014257 |
catgtatttatgctagaatcttaatgttcatgagaagaatgaaataagaagtgataaactaaaacagatcaacaagaggaattaaaaagaaaataaaata |
37014158 |
T |
|
| Q |
308 |
tatattacttggtaggtgt |
326 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
37014157 |
tatattacttggtaggtgt |
37014139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 36443639 - 36443693
Alignment:
| Q |
77 |
ttattggtaatgatatcagaaattgtaatgattaaggttgttgttaataattaat |
131 |
Q |
| |
|
|||||||||||||||||| |||||||||| | ||||||||||||||||||||||| |
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|
| T |
36443639 |
ttattggtaatgatatcacaaattgtaataactaaggttgttgttaataattaat |
36443693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 314
Target Start/End: Original strand, 36443810 - 36443880
Alignment:
| Q |
244 |
gaatgaaataagaagtgataaactaaaacagatcaacaagaggaatcaaaaagaaaagaaaatatatatta |
314 |
Q |
| |
|
||||||| |||||||||||||||||| ||| |||||||| ||||| |||||||| ||||||||||||||| |
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|
| T |
36443810 |
gaatgaagtaagaagtgataaactaagacaaatcaacaaagggaattaaaaagaagagaaaatatatatta |
36443880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 209 - 325
Target Start/End: Original strand, 19180933 - 19181049
Alignment:
| Q |
209 |
atgtatttatgctaaaatcttaatgttcatgagaagaatgaaataagaagtgataaactaaaacagatcaacaagaggaatcaaaaagaaaagaaaatat |
308 |
Q |
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|||||| ||||||| ||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
19180933 |
atgtatgtatgctagaatcttagtgttcatgagaagaatgaagtaagaagtgataatctaaaacagatcaacaagaggaattaaaaagaaaagaaaatat |
19181032 |
T |
|
| Q |
309 |
atattacttggtaggtg |
325 |
Q |
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||||||||||||||||| |
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|
| T |
19181033 |
atattacttggtaggtg |
19181049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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