View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4623-Insertion-8 (Length: 127)
Name: NF4623-Insertion-8
Description: NF4623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4623-Insertion-8 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 113; Significance: 1e-57; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 7 - 127
Target Start/End: Complemental strand, 28402273 - 28402153
Alignment:
| Q |
7 |
attcttaaatacaactgttccaatgccttctactgtaatttttgctccattcgcaactctgataacataagaataagatttgtcgagttctgtaaaaagt |
106 |
Q |
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| T |
28402273 |
attcttaaatacaactgttccaatgccttctactgtaatttttgctccattcgcaactctgatcacataagaataagatttgtcgagttgtgtaaaaagt |
28402174 |
T |
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| Q |
107 |
tctcgatcacaagttaaatga |
127 |
Q |
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| T |
28402173 |
tctcgatcacaagttaaatga |
28402153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 2e-43
Query Start/End: Original strand, 7 - 127
Target Start/End: Complemental strand, 19931229 - 19931109
Alignment:
| Q |
7 |
attcttaaatacaactgttccaatgccttctactgtaatttttgctccattcgcaactctgataacataagaataagatttgtcgagttctgtaaaaagt |
106 |
Q |
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||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| | || ||| |||||||||||||||||||||||||||||| |
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| T |
19931229 |
attcttaaatacaactgttccaatgccttctgctgtaatatttgctccattcgcaactgtcatcacagaagaataagatttgtcgagttctgtaaaaaaa |
19931130 |
T |
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| Q |
107 |
tctcgatcacaagttaaatga |
127 |
Q |
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| T |
19931129 |
tctcgatcacaagttaaatga |
19931109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 19134071 - 19134189
Alignment:
| Q |
7 |
attcttaaatacaactgttccaatgccttctactgtaatttttgctccattcgcaactctgataacataagaataagatttgtcgagttctgtaaaaagt |
106 |
Q |
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|||||||||||| | |||||||||||||||| |||||||| |||||||||||||||||| || ||| |||||||||||||||||||||| ||||||| | |
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| T |
19134071 |
attcttaaatactattgttccaatgccttctgatgtaatttctgctccattcgcaactctaatcacagaagaataagatttgtcgagttcggtaaaaact |
19134170 |
T |
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| Q |
107 |
tctcgatcacaagttaaat |
125 |
Q |
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||||||||||||||||||| |
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| T |
19134171 |
tctcgatcacaagttaaat |
19134189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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