View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4623_high_1 (Length: 361)

Name: NF4623_high_1
Description: NF4623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4623_high_1
NF4623_high_1
[»] chr3 (39 HSPs)
chr3 (1-353)||(7942253-7942605)
chr3 (182-351)||(37757669-37757838)
chr3 (188-315)||(2476589-2476716)
chr3 (180-287)||(2659149-2659256)
chr3 (230-315)||(7324400-7324485)
chr3 (195-308)||(9561961-9562074)
chr3 (173-293)||(2631297-2631417)
chr3 (152-308)||(37753321-37753477)
chr3 (154-289)||(7430531-7430666)
chr3 (186-293)||(9565820-9565927)
chr3 (234-315)||(2492083-2492164)
chr3 (230-287)||(2644359-2644416)
chr3 (201-293)||(43991928-43992020)
chr3 (231-293)||(754600-754662)
chr3 (186-287)||(7334236-7334337)
chr3 (232-284)||(2442038-2442090)
chr3 (231-287)||(13498222-13498278)
chr3 (233-308)||(2696708-2696783)
chr3 (231-308)||(9587161-9587238)
chr3 (233-301)||(1891047-1891115)
chr3 (191-287)||(2502106-2502202)
chr3 (225-315)||(2635716-2635803)
chr3 (233-301)||(4142117-4142185)
chr3 (172-284)||(9594624-9594736)
chr3 (178-284)||(768329-768435)
chr3 (179-318)||(771465-771604)
chr3 (179-286)||(2456195-2456302)
chr3 (233-284)||(3754600-3754651)
chr3 (233-284)||(4157944-4157995)
chr3 (234-293)||(7442968-7443027)
chr3 (231-308)||(783775-783852)
chr3 (235-284)||(2459277-2459326)
chr3 (245-293)||(746374-746422)
chr3 (103-141)||(1437863-1437901)
chr3 (104-141)||(763710-763747)
chr3 (104-141)||(9585284-9585321)
chr3 (233-261)||(792927-792955)
chr3 (233-273)||(956381-956421)
chr3 (231-311)||(14888585-14888665)
[»] chr2 (9 HSPs)
chr2 (179-353)||(33038106-33038280)
chr2 (179-353)||(33020259-33020433)
chr2 (189-353)||(33026613-33026780)
chr2 (233-284)||(36577366-36577417)
chr2 (233-307)||(7156169-7156243)
chr2 (243-292)||(6538844-6538893)
chr2 (233-284)||(7160754-7160805)
chr2 (231-292)||(34570461-34570522)
chr2 (104-140)||(33020181-33020217)
[»] scaffold0044 (1 HSPs)
scaffold0044 (104-317)||(89014-89227)
[»] chr7 (2 HSPs)
chr7 (179-353)||(39298923-39299097)
chr7 (232-284)||(1078160-1078212)
[»] chr5 (10 HSPs)
chr5 (233-284)||(11081813-11081864)
chr5 (230-288)||(20292992-20293050)
chr5 (233-284)||(23766862-23766913)
chr5 (233-284)||(23769646-23769697)
chr5 (233-284)||(23816710-23816761)
chr5 (233-284)||(23819494-23819545)
chr5 (230-288)||(20301440-20301498)
chr5 (230-288)||(20305853-20305911)
chr5 (230-288)||(20310257-20310315)
chr5 (233-273)||(23732167-23732207)
[»] chr1 (2 HSPs)
chr1 (237-315)||(51381424-51381502)
chr1 (233-273)||(23896148-23896188)
[»] chr6 (2 HSPs)
chr6 (234-289)||(24417481-24417536)
chr6 (190-284)||(17368323-17368417)


Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 7942253 - 7942605
Alignment:
Q  1 aaggagagaggacattccatagtcgggttatgtcaatagataaggaatgtgtgttagaggcacggtaaattggtttgcatttggtgatttggatgagtat 100  Q
    ||||| ||||||| ||||||| || |||||||||||| |   |||||  | |||||| |||||  | |||||||||||||||||||||||||||||||||    
T  7942253 aaggatagaggactttccatattctggttatgtcaattgtgtaggaacatttgttagtggcacaatcaattggtttgcatttggtgatttggatgagtat 7942352  T
Q  101 gctattgtttcgcttgatttggagaaggagacgtatcaaaatattacacctcctgatttggagaaggatttatggacgttgggggtggtgagggattgtt 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7942353 gctattgtttcgcttgatttgaagaaggagacgtatcaaaatattacacctcctgatttggagaaggatttatggaccttgggggtggtgagggattgtt 7942452  T
Q  201 tgtgtatctttgcacgtagtaaaatgttgttggatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgtacagtgttcattacat 300  Q
    |||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||| ||||||    
T  7942453 tgtgtacctttgcacgtagtaagatgttattggatgtttggattatgaaggagtatggtaataaagagtcttggattaaattgtacaatgttccttacat 7942552  T
Q  301 ggaagatcgaggtttgtgtgcctatacaaaggctttatatatttctgatgatg 353  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7942553 ggaagatcgaggtttgtgtgcctatacaaaagctttatatatttctgatgatg 7942605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 182 - 351
Target Start/End: Complemental strand, 37757838 - 37757669
Alignment:
Q  182 ggggtggtgagggattgtttgtgtatctttgcacgtagtaaaatgttgttggatgtttggattatgaaggagtatggtaataaagagtcttgaactaaat 281  Q
    |||||||| |||||||  ||||| || ||||||  |||| ||||||  |||||| | |||||||||||||| ||||| || ||||||||||| || || |    
T  37757838 ggggtggttagggattacttgtgcatttttgcaaatagtgaaatgtgtttggatatatggattatgaaggaatatggaaacaaagagtcttggacgaagt 37757739  T
Q  282 tgtacagtgttcattacatggaagatcgaggtttgtgtgcctatacaaaggctttatatatttctgatga 351  Q
    |||||||||||| |||| ||||| || | ||||||| ||| |  || |||||||||||||||||||||||    
T  37757738 tgtacagtgttccttacgtggaaaattggggtttgtatgctttcaccaaggctttatatatttctgatga 37757669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 188 - 315
Target Start/End: Original strand, 2476589 - 2476716
Alignment:
Q  188 gtgagggattgtttgtgtatctttgcacgtagtaaaatgttgttggatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgtaca 287  Q
    ||||||||||| |||||||||| ||||  |||| | |||||  |||||||||||||||||||  | ||||| |||||||||||||| |||||||||||||    
T  2476589 gtgagggattgcttgtgtatctctgcagctagtgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtaca 2476688  T
Q  288 gtgttcattacatggaagatcgaggttt 315  Q
     ||||| | ||||| ||||||| |||||    
T  2476689 ctgttcctaacatgcaagatcggggttt 2476716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 180 - 287
Target Start/End: Complemental strand, 2659256 - 2659149
Alignment:
Q  180 tgggggtggtgagggattgtttgtgtatctttgcacgtagtaa--aatgttgttggatgtttggattatgaaggagtatggtaataaagagtcttgaact 277  Q
    |||| |||||||||||||| |||||| |||||||| ||||| |  ||| |||  ||||||||||||||||||||||||||| ||| |||||||||| |||    
T  2659256 tgggtgtggtgagggattgcttgtgtgtctttgcaagtagtgatgaatattg--ggatgtttggattatgaaggagtatggaaatcaagagtcttggact 2659159  T
Q  278 aaattgtaca 287  Q
    ||||||||||    
T  2659158 aaattgtaca 2659149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 230 - 315
Target Start/End: Complemental strand, 7324485 - 7324400
Alignment:
Q  230 ttggatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgtacagtgttcattacatggaagatcgaggttt 315  Q
    ||||||||||||||||||||||| || || |||||||||||||| ||||||||||| ||||||| | ||||| ||||||| |||||    
T  7324485 ttggatgtttggattatgaaggactacggaaataaagagtcttggactaaattgtatagtgttcctaacatgcaagatcgcggttt 7324400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 195 - 308
Target Start/End: Complemental strand, 9562074 - 9561961
Alignment:
Q  195 attgtttgtgtatctttgcacgtagtaaaatgttgttggatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgtacagtgttca 294  Q
    |||| ||||||||||| ||   ||||||  |||| |||||||||||||||||||| |||||||| ||| |||||||||| |||||||| ||||||||||     
T  9562074 attgcttgtgtatcttagctactagtaatttgtttttggatgtttggattatgaatgagtatggaaatcaagagtcttggactaaattatacagtgttcc 9561975  T
Q  295 ttacatggaagatc 308  Q
    | ||||| ||||||    
T  9561974 taacatgcaagatc 9561961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 173 - 293
Target Start/End: Original strand, 2631297 - 2631417
Alignment:
Q  173 tggacgttgggggtggtgagggattgtttgtgtatctttgcacgtagtaaaatgttgttggatgtttggattatgaaggagtatggtaataaagagtctt 272  Q
    ||||| ||||| ||| |||| ||||  |||||| ||||||||  |||| | ||||| ||| ||||||||||||||||||| ||||| ||| |||||||||    
T  2631297 tggacattgggtgtgctgagtgattacttgtgtgtctttgcaactagtgatatgtttttgaatgtttggattatgaaggaatatggaaatcaagagtctt 2631396  T
Q  273 gaactaaattgtacagtgttc 293  Q
    | |||||||||| ||||||||    
T  2631397 ggactaaattgtgcagtgttc 2631417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 152 - 308
Target Start/End: Complemental strand, 37753477 - 37753321
Alignment:
Q  152 cctgatttggagaaggatttatggacgttgggggtggtgagggattgtttgtgtatctttgcacgtagtaaaatgttgttggatgtttggattatgaagg 251  Q
    ||||||||||||| |||||| ||||| || ||  ||||| ||||||   |||| ||||||||| ||| | || ||||  ||||||||||||||||| |||    
T  37753477 cctgatttggagacggatttgtggaccttaggattggtgtgggattacctgtgcatctttgcaagtaatgaattgtttatggatgtttggattatggagg 37753378  T
Q  252 agtatggtaataaagagtcttgaactaaattgtacagtgttcattacatggaagatc 308  Q
    | ||||| || ||||||||||| |||||||||| ||  |||| |||| |||||||||    
T  37753377 aatatggaaagaaagagtcttggactaaattgtgcaaggttccttacttggaagatc 37753321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 289
Target Start/End: Complemental strand, 7430666 - 7430531
Alignment:
Q  154 tgatttggagaaggatttatggacgttgggggtggtgagggattgtttgtgtatctttgcacgtagtaaaatgttgttggatgtttggattatgaaggag 253  Q
    ||||||||||||||||  |||||  ||||| ||| ||  |||||| ||||| ||||||||| || || |   ||| ||||||||||||||||||||| ||    
T  7430666 tgatttggagaaggatcgatggatcttgggtgtgttgtaggattgcttgtgcatctttgcaagttgtcatgggtttttggatgtttggattatgaagaag 7430567  T
Q  254 tatggtaataaagagtcttgaactaaattgtacagt 289  Q
    ||||| |||||| ||||||  |||||||||||||||    
T  7430566 tatggaaataaaaagtcttagactaaattgtacagt 7430531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 293
Target Start/End: Complemental strand, 9565927 - 9565820
Alignment:
Q  186 tggtgagggattgtttgtgtatctttgcacgtagtaaaatgttgttggatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgta 285  Q
    ||||||||| ||| |||||| |||||||| ||||| | ||||   ||||||||||||||||||||||||| ||  || |||||||||| |||||||||||    
T  9565927 tggtgaggggttgcttgtgtgtctttgcaagtagtgatatgtatatggatgtttggattatgaaggagtacggagatcaagagtcttggactaaattgta 9565828  T
Q  286 cagtgttc 293  Q
    || |||||    
T  9565827 cattgttc 9565820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 234 - 315
Target Start/End: Original strand, 2492083 - 2492164
Alignment:
Q  234 atgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgtacagtgttcattacatggaagatcgaggttt 315  Q
    ||||||||||||||||||||||||| |||  ||||||||| ||||||||||| ||||||| | ||||| ||||||| |||||    
T  2492083 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcctaacatgcaagatcggggttt 2492164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 230 - 287
Target Start/End: Complemental strand, 2644416 - 2644359
Alignment:
Q  230 ttggatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgtaca 287  Q
    ||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||    
T  2644416 ttggatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgtaca 2644359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 293
Target Start/End: Original strand, 43991928 - 43992020
Alignment:
Q  201 tgtgtatctttgcacgtagtaaaatgttgttggatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgtacagtgttc 293  Q
    ||||||||||  || ||||| | ||||| ||||||||||||||||||||||| ||||| |||| ||||||||| || |||||||| |||||||    
T  43991928 tgtgtatcttgacatgtagtcatatgtttttggatgtttggattatgaaggaatatggaaatatagagtcttggaccaaattgtatagtgttc 43992020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 754662 - 754600
Alignment:
Q  231 tggatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgtacagtgttc 293  Q
    ||||||||||||||||||||||||||||  || |||||||||| ||||||||||||| |||||    
T  754662 tggatgtttggattatgaaggagtatggagatcaagagtcttggactaaattgtacattgttc 754600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 186 - 287
Target Start/End: Complemental strand, 7334337 - 7334236
Alignment:
Q  186 tggtgagggattgtttgtgtatctttgcacgtagtaaaatgttgttggatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgta 285  Q
    ||||||||||||| |||||| |||||||  ||||| | || |  | |||||||||||| |||||||| || || |||||||||||||| |||||||||||    
T  7334337 tggtgagggattgcttgtgtgtctttgccagtagtgatatatattgggatgtttggatcatgaaggactacggaaataaagagtcttggactaaattgta 7334238  T
Q  286 ca 287  Q
    ||    
T  7334237 ca 7334236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 232 - 284
Target Start/End: Original strand, 2442038 - 2442090
Alignment:
Q  232 ggatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgt 284  Q
    ||||||||||||||||||||||||||| |||||||| ||||| ||||||||||    
T  2442038 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 2442090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 13498222 - 13498278
Alignment:
Q  231 tggatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgtaca 287  Q
    |||||||||||||||||||||| ||||| |||||||||||||| |||||||| ||||    
T  13498222 tggatgtttggattatgaaggaatatggaaataaagagtcttggactaaattataca 13498278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 308
Target Start/End: Complemental strand, 2696783 - 2696708
Alignment:
Q  233 gatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgtacagtgttcattacatggaagatc 308  Q
    |||||||||||||||||||| ||||| |||||||||||||| | |||||||| || |||   ||||||||||||||    
T  2696783 gatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgttcactgtatcttacatggaagatc 2696708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 308
Target Start/End: Complemental strand, 9587238 - 9587161
Alignment:
Q  231 tggatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgtacagtgttcattacatggaagatc 308  Q
    |||| ||||||||||||||||| ||||| ||||||||| |||| || |||||||||| | ||| |||||||| |||||    
T  9587238 tggaggtttggattatgaaggaatatggaaataaagagccttggacaaaattgtacaatattccttacatgggagatc 9587161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 1891115 - 1891047
Alignment:
Q  233 gatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgtacagtgttcattacatg 301  Q
    ||||||||||||||||||||  |||| |||||||| ||||| ||||||||||| ||||||  |||||||    
T  1891115 gatgtttggattatgaaggaacatggaaataaagactcttggactaaattgtatagtgtttcttacatg 1891047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 191 - 287
Target Start/End: Original strand, 2502106 - 2502202
Alignment:
Q  191 agggattgtttgtgtatctttgcacgtagtaa--aatgttgttggatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgtaca 287  Q
    |||||||| |||||| |||||||| ||||| |  ||| |||  ||||||||||||||||||||||||||| ||||| |||| ||| |||||| ||||||    
T  2502106 agggattgcttgtgtgtctttgcaggtagtgatgaatattg--ggatgtttggattatgaaggagtatggaaataaggagttttggactaaactgtaca 2502202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 225 - 315
Target Start/End: Original strand, 2635716 - 2635803
Alignment:
Q  225 tgttgttggatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgtacagtgttcattacatggaagatcgaggttt 315  Q
    |||| ||||||||||||||||||   |||||||| | | |||||||||| ||||||||||||||||||| | ||||| || |||| |||||    
T  2635716 tgtttttggatgtttggattatg---gagtatggaagtgaagagtcttggactaaattgtacagtgttcctaacatgcaacatcggggttt 2635803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 4142185 - 4142117
Alignment:
Q  233 gatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgtacagtgttcattacatg 301  Q
    ||||||||| |||||||||| ||||| |||||||||||||| |||||||||| || | ||| |||||||    
T  4142185 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 4142117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 172 - 284
Target Start/End: Complemental strand, 9594736 - 9594624
Alignment:
Q  172 atggacgttgggggtggtgagggattgtttgtgtatctttgcacgtagtaaaatgttgttggatgtttggattatgaaggagtatggtaataaagagtct 271  Q
    ||||| |||||  ||| |||||||||| |||||| |||||| |  |||| | ||||| ||| ||||||||||||||||  |||| || ||| ||||||||    
T  9594736 atggaggttggatgtgctgagggattgcttgtgtgtctttgaaactagtgatatgtttttgaatgtttggattatgaataagtacggaaatgaagagtct 9594637  T
Q  272 tgaactaaattgt 284  Q
    || ||||||||||    
T  9594636 tggactaaattgt 9594624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 284
Target Start/End: Complemental strand, 768435 - 768329
Alignment:
Q  178 gttgggggtggtgagggattgtttgtgtatctttg-cacgtagtaaaatgttgttggatgtttggattatgaaggagtatggtaataaagagtcttgaac 276  Q
    |||||| ||| |||||||||| |||||| | |||| ||| |||| ||||||| ||  |||||||||||||||| ||||| || ||| |||||||||| ||    
T  768435 gttgggtgtgttgagggattgcttgtgtgtatttgacac-tagtgaaatgttttttaatgtttggattatgaatgagtacggaaatgaagagtcttggac 768337  T
Q  277 taaattgt 284  Q
    ||||||||    
T  768336 taaattgt 768329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 318
Target Start/End: Complemental strand, 771604 - 771465
Alignment:
Q  179 ttgggggtggtgagggattgtttgtgtatctttgcacgtagtaaaatgttgttggatgtttggattatgaaggagtatggtaataaagagtcttgaacta 278  Q
    ||||||||| |||  ||||| ||||| || ||||||  | || | ||||| | |||||||||| |||||||||| ||||| |||| ||| ||||| ||||    
T  771604 ttgggggtgttgaaagattgcttgtgcatttttgcaaattgtgatatgttttgggatgtttgggttatgaaggaatatggaaatacagactcttggacta 771505  T
Q  279 aattgtacagtgttcattacatggaagatcgaggtttgtg 318  Q
    ||||||||   |||| |||||||  | |||||||||||||    
T  771504 aattgtaccacgttccttacatgagatatcgaggtttgtg 771465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 286
Target Start/End: Original strand, 2456195 - 2456302
Alignment:
Q  179 ttgggggtggtgagggattgtttgtgtatctttgcacgtagtaaaatgttgttggatgtttggattatgaaggagtatggtaataaagagtcttgaacta 278  Q
    ||||||||| |||  ||||| ||||| || ||||||  | || | ||||| | |||||||||| |||||||||| ||||| |||||||| ||||| ||||    
T  2456195 ttgggggtgctgaaagattgcttgtgcatttttgcaaattgtgatatgttttgggatgtttgggttatgaaggaatatggaaataaagactcttggacta 2456294  T
Q  279 aattgtac 286  Q
    ||||||||    
T  2456295 aattgtac 2456302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 3754600 - 3754651
Alignment:
Q  233 gatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgt 284  Q
    ||||||||| |||||||||| ||||| |||||||||||||| ||||||||||    
T  3754600 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaattgt 3754651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 4157995 - 4157944
Alignment:
Q  233 gatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgt 284  Q
    ||||||||| |||||||||| ||||| |||||||||||||| ||||||||||    
T  4157995 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgt 4157944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 293
Target Start/End: Complemental strand, 7443027 - 7442968
Alignment:
Q  234 atgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgtacagtgttc 293  Q
    |||||||||| |||||||||||||| ||| |||||||||| ||||| ||||| |||||||    
T  7443027 atgtttggatcatgaaggagtatggaaatcaagagtcttggactaagttgtatagtgttc 7442968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 308
Target Start/End: Complemental strand, 783852 - 783775
Alignment:
Q  231 tggatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgtacagtgttcattacatggaagatc 308  Q
    |||||||||||||||||||||| ||||| |||| | || | || ||||||||||| | ||||| |||||||| |||||    
T  783852 tggatgtttggattatgaaggaatatggaaatacaaagccatggactaaattgtatactgttccttacatgggagatc 783775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 2459277 - 2459326
Alignment:
Q  235 tgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgt 284  Q
    |||||||||||||||||| ||||| |||||||||||||| || |||||||    
T  2459277 tgtttggattatgaaggaatatggaaataaagagtcttggacaaaattgt 2459326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 746422 - 746374
Alignment:
Q  245 atgaaggagtatggtaataaagagtcttgaactaaattgtacagtgttc 293  Q
    |||||||||||||| ||| |||||||||| ||||||||||||| |||||    
T  746422 atgaaggagtatggaaatcaagagtcttggactaaattgtacattgttc 746374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 141
Target Start/End: Original strand, 1437863 - 1437901
Alignment:
Q  103 tattgtttcgcttgatttggagaaggagacgtatcaaaa 141  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  1437863 tattgtttctcttgatttagagaaggagacgtatcaaaa 1437901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 763747 - 763710
Alignment:
Q  104 attgtttcgcttgatttggagaaggagacgtatcaaaa 141  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  763747 attgtttctcttgatttggagaaggagtcgtatcaaaa 763710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 9585321 - 9585284
Alignment:
Q  104 attgtttcgcttgatttggagaaggagacgtatcaaaa 141  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  9585321 attgtttctcttgatttggagaaggagtcgtatcaaaa 9585284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 261
Target Start/End: Complemental strand, 792955 - 792927
Alignment:
Q  233 gatgtttggattatgaaggagtatggtaa 261  Q
    |||||||||||||||||||||||||||||    
T  792955 gatgtttggattatgaaggagtatggtaa 792927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 956381 - 956421
Alignment:
Q  233 gatgtttggattatgaaggagtatggtaataaagagtcttg 273  Q
    |||||||||||||||||||| ||||| || |||||||||||    
T  956381 gatgtttggattatgaaggaatatggaaaaaaagagtcttg 956421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 311
Target Start/End: Complemental strand, 14888665 - 14888585
Alignment:
Q  231 tggatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgtacagtgttcattacatggaagatcgag 311  Q
    |||| |||||||||||||| || ||||  ||||||||| |||  ||||||||||||| | ||  |||||||| ||||||||    
T  14888665 tggaggtttggattatgaatgaatatgaaaataaagagccttagactaaattgtacaatattacttacatgggagatcgag 14888585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 5e-44; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 179 - 353
Target Start/End: Original strand, 33038106 - 33038280
Alignment:
Q  179 ttgggggtggtgagggattgtttgtgtatctttgcacgtagtaaaatgttgttggatgtttggattatgaaggagtatggtaataaagagtcttgaacta 278  Q
    ||||||||  |||||||||| ||||| ||||||||| ||||| | ||||| || |||||||||||||||||||| ||||| || ||| ||||||| ||||    
T  33038106 ttgggggttttgagggattgcttgtgcatctttgcaagtagtgatatgttttttgatgtttggattatgaaggaatatggaaacaaaaagtcttggacta 33038205  T
Q  279 aattgtacagtgttcattacatggaagatcgaggtttgtgtgcctatacaaaggctttatatatttctgatgatg 353  Q
     ||||||| |||||| ||||||||||||||| |||||||||  ||||||||||||||||||||||||||| ||||    
T  33038206 gattgtaccgtgttccttacatggaagatcggggtttgtgtcgctatacaaaggctttatatatttctgaggatg 33038280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 179 - 353
Target Start/End: Original strand, 33020259 - 33020433
Alignment:
Q  179 ttgggggtggtgagggattgtttgtgtatctttgcacgtagtaaaatgttgttggatgtttggattatgaaggagtatggtaataaagagtcttgaacta 278  Q
    ||||||||  |||||||||| |||||  ||||||||  |||| | ||||| ||  |||| |||||||||||||| ||||| |||||| ||||||| ||||    
T  33020259 ttgggggttttgagggattgcttgtgcttctttgcaaatagtgatatgttttttaatgtgtggattatgaaggaatatggaaataaaaagtcttggacta 33020358  T
Q  279 aattgtacagtgttcattacatggaagatcgaggtttgtgtgcctatacaaaggctttatatatttctgatgatg 353  Q
     ||||||| |||||| ||||||||||||||| |||||||||  ||||||||||||||||||||||||||| ||||    
T  33020359 gattgtaccgtgttccttacatggaagatcggggtttgtgtcactatacaaaggctttatatatttctgaggatg 33020433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 189 - 353
Target Start/End: Original strand, 33026613 - 33026780
Alignment:
Q  189 tgagggattgtttgtgtatctttgcacgtagtaaaatgttgttggatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgtacag 288  Q
    |||||||||| ||||| ||||||| | | | | | ||||| |||||||||||| |||||||| | ||||| |||||| ||||||| |||| ||||||| |    
T  33026613 tgagggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgtaccg 33026712  T
Q  289 tgttcattacatggaagatcgaggt---ttgtgtgcctatacaaaggctttatatatttctgatgatg 353  Q
    ||||| | |||||||  |||| |||   ||||||  |||||||| || ||||||||||||||| ||||    
T  33026713 tgttcctcacatggacaatcggggtttgttgtgtaactatacaagggttttatatatttctgaggatg 33026780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 36577366 - 36577417
Alignment:
Q  233 gatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgt 284  Q
    |||||||||||||||||||| ||||| |||||||||||||| | ||||||||    
T  36577366 gatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgt 36577417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 307
Target Start/End: Complemental strand, 7156243 - 7156169
Alignment:
Q  233 gatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgtacagtgttcattacatggaagat 307  Q
    ||||||||| |||||||||||||||| ||| |||| |||||  ||||||||| | |||||| |||||||| ||||    
T  7156243 gatgtttggcttatgaaggagtatggaaatgaagattcttgggctaaattgttccgtgttccttacatgggagat 7156169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 292
Target Start/End: Original strand, 6538844 - 6538893
Alignment:
Q  243 ttatgaaggagtatggtaataaagagtcttgaactaaattgtacagtgtt 292  Q
    |||||||||||||||| |||||||| ||||| |||||||||| |||||||    
T  6538844 ttatgaaggagtatggaaataaagattcttggactaaattgttcagtgtt 6538893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 7160805 - 7160754
Alignment:
Q  233 gatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgt 284  Q
    ||||||||| |||||||||||||||| ||||| || ||||| ||||||||||    
T  7160805 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgt 7160754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 292
Target Start/End: Complemental strand, 34570522 - 34570461
Alignment:
Q  231 tggatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgtacagtgtt 292  Q
    ||||||||||| ||||| |||| ||||| |||||| ||| || |||||||||||| ||||||    
T  34570522 tggatgtttgggttatggaggaatatggaaataaaaagtattcaactaaattgtatagtgtt 34570461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 33020181 - 33020217
Alignment:
Q  104 attgtttcgcttgatttggagaaggagacgtatcaaa 140  Q
    |||||||| |||||||||||||||||| |||||||||    
T  33020181 attgtttctcttgatttggagaaggagtcgtatcaaa 33020217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 104 - 317
Target Start/End: Original strand, 89014 - 89227
Alignment:
Q  104 attgtttcgcttgatttggagaaggagacgtatcaaaatattacacctcctgatttggagaaggatttatggacgttgggggtggtgagggattgtttgt 203  Q
    |||||||| |||||||||||||| ||| ||||| ||||  || ||| |||||||||||| || || || ||||| ||||||||| | | |||||| ||||    
T  89014 attgtttcacttgatttggagaatgagtcgtataaaaagcttccacatcctgatttggaaaacgagttgtggaccttgggggtgttaacggattgcttgt 89113  T
Q  204 gtatctttgcacgtagtaaaatgttgttggatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgtacagtgttcattacatgga 303  Q
    | |||||| || ||||| | || || || ||| ||||| |||||||||| ||||| |||||||||||||| ||||||||||||| ||||| |||||||||    
T  89114 gcatctttacaagtagtgatatattttttgatatttgggttatgaaggaatatggaaataaagagtcttggactaaattgtacaatgttccttacatgga 89213  T
Q  304 agatcgaggtttgt 317  Q
    |||||| |||||||    
T  89214 agatcgtggtttgt 89227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 179 - 353
Target Start/End: Original strand, 39298923 - 39299097
Alignment:
Q  179 ttgggggtggtgagggattgtttgtgtatctttgcacgtagtaaaatgttgttggatgtttggattatgaaggagtatggtaataaagagtcttgaacta 278  Q
    ||||| ||| ||| ||||||| |||| |||| | | |||| ||  ||||| || ||||||||| || ||||||| | ||| ||||||||||| || ||||    
T  39298923 ttgggagtgttgaaggattgtctgtgcatctatacgcgtaatattatgttttttgatgtttgggttttgaaggaatgtggaaataaagagtcctggacta 39299022  T
Q  279 aattgtacagtgttcattacatggaagatcgaggtttgtgtgcctatacaaaggctttatatatttctgatgatg 353  Q
    |||| |||||||||| ||||||||||||||  ||||  | | |||| || |||||||||||||||||||| ||||    
T  39299023 aattttacagtgttccttacatggaagatcagggttcattttcctacaccaaggctttatatatttctgaggatg 39299097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 1078212 - 1078160
Alignment:
Q  232 ggatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgt 284  Q
    |||||||||| |||||||||||||||| |||| |||||| || ||||||||||    
T  1078212 ggatgtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgt 1078160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 11081813 - 11081864
Alignment:
Q  233 gatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgt 284  Q
    ||||||||| |||||||||||||||| |||||||||||||| ||||||||||    
T  11081813 gatgtttgggttatgaaggagtatggaaataaagagtcttggactaaattgt 11081864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 230 - 288
Target Start/End: Original strand, 20292992 - 20293050
Alignment:
Q  230 ttggatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgtacag 288  Q
    ||||||||||||||||||||||| ||||| | |||||||||||| |||||||| |||||    
T  20292992 ttggatgtttggattatgaaggaatatggaattaaagagtcttggactaaattatacag 20293050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 23766913 - 23766862
Alignment:
Q  233 gatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgt 284  Q
    ||||||||||||||||| || ||||| |||||||||||||| ||||||||||    
T  23766913 gatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgt 23766862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 23769697 - 23769646
Alignment:
Q  233 gatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgt 284  Q
    |||||||||||||||||||| ||||| ||||||| |||||| ||||||||||    
T  23769697 gatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgt 23769646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 23816761 - 23816710
Alignment:
Q  233 gatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgt 284  Q
    ||||||||||||||||| || ||||| |||||||||||||| ||||||||||    
T  23816761 gatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgt 23816710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 23819545 - 23819494
Alignment:
Q  233 gatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgt 284  Q
    |||||||||||||||||||| ||||| ||||||| |||||| ||||||||||    
T  23819545 gatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgt 23819494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 288
Target Start/End: Original strand, 20301440 - 20301498
Alignment:
Q  230 ttggatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgtacag 288  Q
    ||||||||||||||||||||||| ||||  | |||||||||||| |||||||| |||||    
T  20301440 ttggatgtttggattatgaaggaatatgcaattaaagagtcttggactaaattatacag 20301498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 288
Target Start/End: Original strand, 20305853 - 20305911
Alignment:
Q  230 ttggatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgtacag 288  Q
    |||||||| |||||||||||||| ||||| | |||||||||||| |||||||| |||||    
T  20305853 ttggatgtctggattatgaaggaatatggaattaaagagtcttggactaaattatacag 20305911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 288
Target Start/End: Original strand, 20310257 - 20310315
Alignment:
Q  230 ttggatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgtacag 288  Q
    |||||||| |||||||||||||| ||||| | |||||||||||| |||||||| |||||    
T  20310257 ttggatgtctggattatgaaggaatatggaattaaagagtcttggactaaattatacag 20310315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 23732167 - 23732207
Alignment:
Q  233 gatgtttggattatgaaggagtatggtaataaagagtcttg 273  Q
    |||||||||||||||||||| ||||| ||||||| ||||||    
T  23732167 gatgtttggattatgaaggaatatgggaataaagcgtcttg 23732207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 315
Target Start/End: Complemental strand, 51381502 - 51381424
Alignment:
Q  237 tttggattatgaaggagtatggtaataaagagtcttgaactaaattgtacagtgttcattacatggaagatcgaggttt 315  Q
    ||||||||||||| || ||||| ||| |||||||||| |||||||||| |||| ||| ||||||||||| ||| |||||    
T  51381502 tttggattatgaaagaatatggaaatgaagagtcttggactaaattgttcagtattccttacatggaaggtcgtggttt 51381424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 23896188 - 23896148
Alignment:
Q  233 gatgtttggattatgaaggagtatggtaataaagagtcttg 273  Q
    ||||||||| |||||||||| ||||| ||||||||||||||    
T  23896188 gatgtttggcttatgaaggaatatggaaataaagagtcttg 23896148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 289
Target Start/End: Complemental strand, 24417536 - 24417481
Alignment:
Q  234 atgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgtacagt 289  Q
    |||||||||||||||| || ||||| |||||||| ||||| |||||||||||||||    
T  24417536 atgtttggattatgaaagaatatggaaataaagaatcttggactaaattgtacagt 24417481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 284
Target Start/End: Original strand, 17368323 - 17368417
Alignment:
Q  190 gagggattgtttgtgtatctttgcacgtagtaaaatgttgttggatgtttggattatgaaggagtatggtaataaagagtcttgaactaaattgt 284  Q
    ||||||||||||| ||||||||||  ||||  ||| ||| || ||||||||| | ||||| |||||||| ||| ||| |||||| ||||||||||    
T  17368323 gagggattgtttgcgtatctttgctagtagacaaaggttttttgatgtttggctgatgaaagagtatggaaatgaagggtcttggactaaattgt 17368417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University