View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4623_low_3 (Length: 334)
Name: NF4623_low_3
Description: NF4623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4623_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 15 - 321
Target Start/End: Complemental strand, 4774668 - 4774362
Alignment:
| Q |
15 |
aggaatcactttatatatttgcactgaaatattttttacgtgacttacatgtctcattcatcttatgatctcacgattctcagcatattcgtatatgcca |
114 |
Q |
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| T |
4774668 |
aggaatcactttatatatttacactgaaatattttttacgtgacttacatgtctcattcatcttatgatctcacgattctcagcatattcgtatatgcca |
4774569 |
T |
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| Q |
115 |
acactaatcacataatttcacacgcttacacgcattaatttattatcataaannnnnnnnacaactggatctttttccacttctatttatttagaaagga |
214 |
Q |
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| T |
4774568 |
acactaatcacataatttcacacgcttacacgcattaatttattatcataaaatttatttacaactggatctttttccacttctatttatttagaaagga |
4774469 |
T |
|
| Q |
215 |
aagcaaagtaaattcacgagcaccatcataaacaatttacttgtataaatgtcaaattattctattattttcttccaaataaaaaattgatataattctt |
314 |
Q |
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| T |
4774468 |
aagcaaagtaaattcacgagcaccatcataaacaatttacttgtataaatgtcaaattattctattattttcttccaaataaaaaattgatataattctt |
4774369 |
T |
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| Q |
315 |
cgtaagt |
321 |
Q |
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||||||| |
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| T |
4774368 |
cgtaagt |
4774362 |
T |
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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 23169136 - 23169187
Alignment:
| Q |
15 |
aggaatcactttatatatttgcactgaaatattttttacgtgacttacatgt |
66 |
Q |
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||||||||||||||||||||| | |||||||||| ||| ||||||||||||| |
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| T |
23169136 |
aggaatcactttatatatttgtagtgaaatatttgttatgtgacttacatgt |
23169187 |
T |
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