View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4623_low_4 (Length: 329)
Name: NF4623_low_4
Description: NF4623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4623_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 2794895 - 2794575
Alignment:
| Q |
1 |
agccttcaaggcaggcacatgaatttcttgataaccttttctcggaagcctgtaagacccatcaggaagatcacattttccctttgtcataaacaaacca |
100 |
Q |
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| T |
2794895 |
agccttcaaggcaggcacatgaatttcttgataaccttttctcggaagcctgtaagacccatcaggaagatcacattttccctttgtcataaacaaacca |
2794796 |
T |
|
| Q |
101 |
ccttgttcaaaagcaaggttatccaaatcaagtatccggcattgacccccattttccccaactccatcaccagttcccctatcaatgtccatgtccccgt |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2794795 |
ccttgttcaaaagcaaggttatccaaatcaagcatccggcgttgacccccattttccccaactccatcaccagttcccctatcaatgtccatgtccccgt |
2794696 |
T |
|
| Q |
201 |
ctttcaaccttcgagcctcgtaccttatactcttctccaagttcttctccctctctatagtagaggctttcacaacatataactcctccaaaattgactc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2794695 |
ctttcaaccttcgagcctcgtaccttatactcttctccaagttcttctccctctctatagtagaggctttcacagcatataactcctccaaaattgactc |
2794596 |
T |
|
| Q |
301 |
caaattcgaccccttcatctc |
321 |
Q |
| |
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||||||||||||||||||||| |
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| T |
2794595 |
caaattcgaccccttcatctc |
2794575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 29262408 - 29262277
Alignment:
| Q |
1 |
agccttcaaggcaggcacatgaatttcttgataaccttttctcg-gaagcctgtaagacccatcaggaagatcacattttccctttgtcataaacaaacc |
99 |
Q |
| |
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||||||||| || || |||||||| |||| |||||||||| ||| || |||| ||||||||||||||||| ||||||||| ||||| |||||| || || |
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| T |
29262408 |
agccttcaatgctggaacatgaatctcttcataacctttt-tcgagatgcctataagacccatcaggaaggtcacattttttctttgccataaataaccc |
29262310 |
T |
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| Q |
100 |
accttgttcaaaagcaaggttatccaaatcaag |
132 |
Q |
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|||||||||||||| |||||||| |||||||| |
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| T |
29262309 |
accttgttcaaaagtgaggttatctaaatcaag |
29262277 |
T |
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