View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4623_low_5 (Length: 298)
Name: NF4623_low_5
Description: NF4623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4623_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 11526516 - 11526236
Alignment:
| Q |
1 |
ataccaaaaatacttcctaccagaccagaacaccaacagtttgaaaaatattaatacaaaaccaccaactttgaaaatatcaattttacattctagtaca |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
11526516 |
ataccaaaaatacttcctacatgaccagaacactaacagtttgaaaatttttaatacaacaccaccaactttgaaaatatcaattttacattctaataca |
11526417 |
T |
|
| Q |
101 |
caacaggtacttaccttctacacactcaacatctactattttctcttatgttagagcaagccatgttaaacgtgttcaaaagttgcaacacaaagatgac |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11526416 |
caacaggtacttaccttctatacactcaacatttactattttctcttaagttagagcaagccaggttaaaagtgttcaaaagttgcaacacaaagatgac |
11526317 |
T |
|
| Q |
201 |
catccaagactacatgtatataatgagtatatggtagacatttttgcccaggtgttgttttgtttttcctccagctttctg |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11526316 |
catccaagactacatgtatataatgagtatatggtggacatttttgcccaggtgttgttttgtttttcctccagttttctg |
11526236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 4079189 - 4079087
Alignment:
| Q |
1 |
ataccaaaaatacttcctaccagaccagaacaccaacagtttgaaaaatattaatacaaaaccaccaactttgaaaatatcaattttacattctagtaca |
100 |
Q |
| |
|
||||||||| ||||| || |||||||| ||||||| |||||| |||||||| ||||||| ||| |||| |||||||||||||| |||||||| || |||| |
|
|
| T |
4079189 |
ataccaaaattactttcttccagaccaaaacaccatcagtttaaaaaatatgaatacaacaccgccaagtttgaaaatatcaaatttacattatactaca |
4079090 |
T |
|
| Q |
101 |
caa |
103 |
Q |
| |
|
||| |
|
|
| T |
4079089 |
caa |
4079087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 16350745 - 16350847
Alignment:
| Q |
1 |
ataccaaaaatacttcctaccagaccagaacaccaacagtttgaaaaatattaatacaaaaccaccaactttgaaaatatcaattttacattctagtaca |
100 |
Q |
| |
|
||||||||| ||||| || |||||||| | ||||| |||||| |||||||| ||||||| |||||||| |||||||||||||| |||||||| || |||| |
|
|
| T |
16350745 |
ataccaaaattactttcttccagaccaaaccaccatcagtttaaaaaatatgaatacaacaccaccaagtttgaaaatatcaaatttacattatactaca |
16350844 |
T |
|
| Q |
101 |
caa |
103 |
Q |
| |
|
||| |
|
|
| T |
16350845 |
caa |
16350847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University