View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4624-Insertion-1 (Length: 1004)
Name: NF4624-Insertion-1
Description: NF4624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4624-Insertion-1 |
 | |
|
| [»] chr2 (7 HSPs) |
| |
|
| [»] scaffold0035 (1 HSPs) |
| | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
| [»] scaffold0596 (1 HSPs) |
| | |
|
| [»] scaffold0096 (1 HSPs) |
| | |
|
| [»] scaffold0157 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 743; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 743; E-Value: 0
Query Start/End: Original strand, 7 - 1004
Target Start/End: Original strand, 1615605 - 1616591
Alignment:
| Q |
7 |
atgtcggtggtgttaaatttgtttaaaatagaaaactaaactgttagaagaaccaaaaagcaagataattcaatacaaacaaccaacataaatataattt |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1615605 |
atgttggtggtgttaaatttgtttaaaatagaaaactaaactgttagaagaaccaaaaagcaagataattcaatacaaacaaccaacataaatataattt |
1615704 |
T |
|
| Q |
107 |
aaaaataatttttctgaactatagaacttgcagaccagagcaattagtaggataaaagccgctaagctgcaactggattaagtggagacgaatcaaaacc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1615705 |
aaaaataatttttctgaactatagaacttgcagaccagagcaaatagtagaataaaagccgctaagctgcaactggattaagtggagacgaatcaaaacc |
1615804 |
T |
|
| Q |
207 |
caagaaaaaaccatttaggtgtatatttacactataagctatattggaatttggtgtataggaaatatacatcaaatttgaaagtttgactcaaattaga |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1615805 |
caagaaaaaaccatttaggtgtatatttacactataagctatattggaatttggtgtataggaaatatacatcaaatttgaaagtttgactcaaattaga |
1615904 |
T |
|
| Q |
307 |
tcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttgtttgaagcaaaaaccatttaggtttaatggttacaaagtcattaac |
405 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1615905 |
tcaaaggatgagatgcatgcttagccaaatgatgcgatccaacgatctcccttgtttggagcaaaaaccatttagatttaatggttacaaagtcattaac |
1616004 |
T |
|
| Q |
406 |
aatgttaacaaagattgaatataagtatgattgaatactgtaacataacatcgtaaccatgagatccgtctaaccatgatgtacctccttagcctaactc |
505 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
1616005 |
aatgttaacaaagattggatataaggatgattgaatactgtaacataacatcgtaaccatg-----------accatgatttacctccttagcctaactc |
1616093 |
T |
|
| Q |
506 |
atcaaaacttttatttatnnnnnnnnnnnncatgaataaataaataaatgacatcctttaatgattgtagttttttaatatttagtatttgtttataaag |
605 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1616094 |
atcaaaacttttatttataaaaaagaaaaacatgaataaataaataaatgacatcctttaatgattgtagttttttaatatttagtatttgtttataaag |
1616193 |
T |
|
| Q |
606 |
atcagtttttatactgtttctggataaatgccctcatatttagtatttatgaatttatttatcggaaagtccctaaaggactcgttgatttgattattta |
705 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1616194 |
atcagtttttatactgtttttgaataaatgccctcatatttagtatttatgaatttatttatcggaaagtccctaaaggactcattgatttgattattta |
1616293 |
T |
|
| Q |
706 |
tgatgaatgatacgtttttattgaattacttaatgcttaattaaaaaattccttttcagaaaaagaaagaagtgccgaattttagaaatctccccttata |
805 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1616294 |
tgatgaatgatacgtttttattgaattacttaatgcttaattaaaaaattccttttcagaaaaagaaagaagtgccgaattttagaaatctccccttata |
1616393 |
T |
|
| Q |
806 |
caagggatttgattgataagaattaatgcaccaaactttacttgatgcataa-nnnnnnnnnnnnnagggaacttaatacat--atttttaagatttggg |
902 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| || |
|
|
| T |
1616394 |
caagggatttgattgataagaattaatgcaccaaactttacttgatgcataattattttattttttagggaacttaatacataaatttttaagattt-gg |
1616492 |
T |
|
| Q |
903 |
cctcaaaatacttataaaatacaacaaattaagtataagtacctctcnnnnnnnctaatatgagtaacgt-aaacaggcgtttgtc-acatttttgtcaa |
1000 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||| ||||||||| ||||||||||||| |
|
|
| T |
1616493 |
cctcaaaatacttataaaatacaa-----taagtataagtacctctcaaaaaaactaatatgagtaacgtaaaacaagcgtttgtcaacatttttgtcaa |
1616587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 264 - 436
Target Start/End: Original strand, 18355260 - 18355434
Alignment:
| Q |
264 |
ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaag-atgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt |
361 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||| |||| |||||||||||| |||||||||||||| ||||||||||||||||||| || |
|
|
| T |
18355260 |
ataggaaatatacatcaaatttgaaaatttgactcagattagattaaaggatgagatgcatgcttagccaaatgatgagatccaacgacctcccttgttt |
18355359 |
T |
|
| Q |
362 |
tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat |
436 |
Q |
| |
|
|| ||| ||||||||||||||||| | || ||| |||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
18355360 |
tggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaacaaagattaaatataagtatgat |
18355434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 264 - 437
Target Start/End: Original strand, 23348927 - 23349102
Alignment:
| Q |
264 |
ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt |
361 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||| |||||||||||||| ||||||||| ||||||||| || |
|
|
| T |
23348927 |
ataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttt |
23349026 |
T |
|
| Q |
362 |
tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgatt |
437 |
Q |
| |
|
|| ||| ||||||||||||||||| | || ||| |||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
23349027 |
tggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagtatgatt |
23349102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 264 - 421
Target Start/End: Complemental strand, 12741862 - 12741703
Alignment:
| Q |
264 |
ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt |
361 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||| |||||||||||||| ||||||||| ||||| ||| || |
|
|
| T |
12741862 |
ataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcctttgttt |
12741763 |
T |
|
| Q |
362 |
tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagatt |
421 |
Q |
| |
|
|| ||| ||||||||||||||||| | || ||| |||||| ||||||||||||||||| |
|
|
| T |
12741762 |
tggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaacaaagatt |
12741703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 277 - 436
Target Start/End: Original strand, 10328851 - 10329013
Alignment:
| Q |
277 |
atcaaatttgaaagtttgactcaaattagatcaaa--gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttgtttga-agcaaaaac |
373 |
Q |
| |
|
||||||||| || ||||||||| ||||||||||| ||||||||||||| |||||||||||||| ||||||||| |||||||||||| | | | ||||| |
|
|
| T |
10328851 |
atcaaattttcaaatttgactcagattagatcaaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttagaaccaaaac |
10328950 |
T |
|
| Q |
374 |
catttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat |
436 |
Q |
| |
|
||||||||||| | || ||| |||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
10328951 |
aatttaggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagtatgat |
10329013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 233 - 363
Target Start/End: Complemental strand, 24454720 - 24454588
Alignment:
| Q |
233 |
ttacactataagctatattggaatttggtgtataggaaatatacatcaaatttgaaagtttg-actcaaattagatcaaa-gatgagatgcatgtttagc |
330 |
Q |
| |
|
|||||||||||||||||| |||||| |||| |||||||| | |||||||||||||||||||| | ||| ||||||||||| ||||||||| |||| ||| |
|
|
| T |
24454720 |
ttacactataagctatatgggaattcggtgcataggaaaaagacatcaaatttgaaagtttgaagtcagattagatcaaaggatgagatgaatgtcaagc |
24454621 |
T |
|
| Q |
331 |
caaatgatgcgatccaacgacctcccttgtttg |
363 |
Q |
| |
|
||||||||| ||||||||| || ||||||||| |
|
|
| T |
24454620 |
caaatgatgagatccaacggccctccttgtttg |
24454588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 24455089 - 24455046
Alignment:
| Q |
7 |
atgtcggtggtgttaaatttgtttaaaatagaaaactaaactgt |
50 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24455089 |
atgttggtggtgttaaatttgtttaaaatagaaaactaaactgt |
24455046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 7e-64; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 233 - 436
Target Start/End: Original strand, 27541475 - 27541679
Alignment:
| Q |
233 |
ttacactataagctatattggaatttggtgtataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaag-atgagatgcatgtttagcc |
331 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||| |||||| |
|
|
| T |
27541475 |
ttacactataagctatatgggaatttggtgcataggaaatatacatcaaatttgaaagtttgattcagattagatcaaaggatgagatgcatgcttagcc |
27541574 |
T |
|
| Q |
332 |
aaatgatgcgatccaacgacctcccttgtttgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagt |
431 |
Q |
| |
|
|||||||| ||||||||| | ||||||||||| ||| ||| ||||||||||||| | || ||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
27541575 |
aaatgatgagatccaacggcgtcccttgtttggagccaaagccatttaggtttagggtttgcaaagtcattagcaatgttaacaaagattagatataagt |
27541674 |
T |
|
| Q |
432 |
atgat |
436 |
Q |
| |
|
||||| |
|
|
| T |
27541675 |
atgat |
27541679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 264 - 436
Target Start/End: Original strand, 14677968 - 14678142
Alignment:
| Q |
264 |
ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt |
361 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||| ||||||||| ||||||||| || |
|
|
| T |
14677968 |
ataggaaatatacattaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttt |
14678067 |
T |
|
| Q |
362 |
tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat |
436 |
Q |
| |
|
|| ||| ||||||||||||||||| | || ||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
14678068 |
tggagccaaaaccatttaggtttagggttttcaaagtcattagcaatgttaacaaagattagatataagtatgat |
14678142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 264 - 436
Target Start/End: Complemental strand, 5657945 - 5657771
Alignment:
| Q |
264 |
ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||| |||||||||| ||||||||| ||||||||| || |
|
|
| T |
5657945 |
ataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacggcctcccttgttt |
5657846 |
T |
|
| Q |
362 |
tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat |
436 |
Q |
| |
|
|| ||| ||||| ||||||||||| | || ||||||||||| ||| ||||||||||||| ||||||||||||| |
|
|
| T |
5657845 |
tggagccaaaactatttaggtttagggtttgcaaagtcattagcaacgttaacaaagattagatataagtatgat |
5657771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 264 - 436
Target Start/End: Original strand, 31100819 - 31100993
Alignment:
| Q |
264 |
ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||| ||| |||||||||| |||| |||| ||||||||| || |
|
|
| T |
31100819 |
ataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatacatgcttaaccaaatgatgagatcgaacggcctcccttgttt |
31100918 |
T |
|
| Q |
362 |
tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat |
436 |
Q |
| |
|
|| ||| ||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
31100919 |
tggagccaaaaccatttaggtttaggatttgcaaagtcattagcaatgttaacaaagattagatataagtatgat |
31100993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 393 - 436
Target Start/End: Complemental strand, 23738700 - 23738657
Alignment:
| Q |
393 |
caaagtcattaacaatgttaacaaagattgaatataagtatgat |
436 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
23738700 |
caaagtcattagcaatgttaacaaagattagatataagtatgat |
23738657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 109; Significance: 3e-54; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 264 - 438
Target Start/End: Complemental strand, 35237 - 35061
Alignment:
| Q |
264 |
ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||| |||||||| |||||||||| || |
|
|
| T |
35237 |
ataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacaacctcccttgttt |
35138 |
T |
|
| Q |
362 |
tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgattg |
438 |
Q |
| |
|
|| ||| ||||||||||||||||| | || ||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
35137 |
tggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaacaaagattagatataagtatgattg |
35061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 2e-51; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 264 - 437
Target Start/End: Complemental strand, 1262262 - 1262087
Alignment:
| Q |
264 |
ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||| ||||||||| | ||||||| || |
|
|
| T |
1262262 |
ataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcttcccttgttt |
1262163 |
T |
|
| Q |
362 |
tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgatt |
437 |
Q |
| |
|
|| ||| ||||||||||||||||| | || ||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
1262162 |
tggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaacaaagattagatataagtatgatt |
1262087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 264 - 437
Target Start/End: Original strand, 48849754 - 48849929
Alignment:
| Q |
264 |
ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||| |||||||| | ||||||| || |
|
|
| T |
48849754 |
ataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacaaaatcccttgttt |
48849853 |
T |
|
| Q |
362 |
tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgatt |
437 |
Q |
| |
|
|| ||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
48849854 |
tggagccaaaaccatttaggtttaggatttacaaagtcattagcaatgttaacaaagattagatataagtatgatt |
48849929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 264 - 441
Target Start/End: Original strand, 43071329 - 43071508
Alignment:
| Q |
264 |
ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt |
361 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||| |||||||||||||| ||||||||| ||||||||| || |
|
|
| T |
43071329 |
ataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttt |
43071428 |
T |
|
| Q |
362 |
tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgattgaat |
441 |
Q |
| |
|
|| ||| ||||||||||||||||| | || ||| |||||| ||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
43071429 |
tggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagtatgatagaat |
43071508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 264 - 437
Target Start/End: Original strand, 26909928 - 26910103
Alignment:
| Q |
264 |
ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||| ||||||| | |||||||| || |
|
|
| T |
26909928 |
ataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttagccaaatgataagatccaatggtctcccttgttt |
26910027 |
T |
|
| Q |
362 |
tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgatt |
437 |
Q |
| |
|
|| ||| ||| ||||||||||||| | || |||||| |||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
26910028 |
tggagccaaatccatttaggtttagggtttgcaaagttattagcaatgttaacaaagattagatataagtatgatt |
26910103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 1e-50; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 264 - 436
Target Start/End: Original strand, 22009475 - 22009649
Alignment:
| Q |
264 |
ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||| ||||||||| ||||||||| || |
|
|
| T |
22009475 |
ataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttt |
22009574 |
T |
|
| Q |
362 |
tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat |
436 |
Q |
| |
|
|| ||| ||||||||||||||||| | || |||| |||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
22009575 |
tggagccaaaaccatttaggtttagggtttgcaaattcattagcaatgttaacaaagattagatataagtatgat |
22009649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 264 - 438
Target Start/End: Complemental strand, 9043976 - 9043800
Alignment:
| Q |
264 |
ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaag-atgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt |
361 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||| |||||||||||| |||||||||||| |||||||||||||| ||||||||| ||||||||| || |
|
|
| T |
9043976 |
ataggaaatatacatcaaatttaaaaatttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttt |
9043877 |
T |
|
| Q |
362 |
tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgattg |
438 |
Q |
| |
|
|| ||| ||||||||||||||||| | || ||| |||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
9043876 |
tggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagtatgattg |
9043800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 264 - 436
Target Start/End: Original strand, 7473436 - 7473610
Alignment:
| Q |
264 |
ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt |
361 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||| ||||| |||||||| ||||||||| ||||||||| || |
|
|
| T |
7473436 |
ataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatgagatgcatgcttagctaaatgatgagatccaacggcctcccttgttt |
7473535 |
T |
|
| Q |
362 |
tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat |
436 |
Q |
| |
|
|| ||| ||||||||||||||||| | || ||| |||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
7473536 |
tggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagtatgat |
7473610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 264 - 435
Target Start/End: Original strand, 30442494 - 30442667
Alignment:
| Q |
264 |
ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt |
361 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||| |||||||||||||| ||||||||| ||||||||| || |
|
|
| T |
30442494 |
ataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttt |
30442593 |
T |
|
| Q |
362 |
tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatga |
435 |
Q |
| |
|
|| ||| ||||||||||||||||| | || ||| |||||| ||||||||||||||||| ||||||| |||| |
|
|
| T |
30442594 |
tggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagcatga |
30442667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 358 - 436
Target Start/End: Original strand, 19085420 - 19085498
Alignment:
| Q |
358 |
tgtttgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat |
436 |
Q |
| |
|
|||||| ||| ||||||||||||||||| | || ||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
19085420 |
tgtttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaacaaagattatatataagtatgat |
19085498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 421
Target Start/End: Original strand, 26840989 - 26841070
Alignment:
| Q |
341 |
gatccaacgacctcccttgttt-gaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagatt |
421 |
Q |
| |
|
||||||||| ||||||||||| | ||| ||||||||||||||||| | || |||| |||||| ||||||||||||||||| |
|
|
| T |
26840989 |
gatccaacggtctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagcaatgttaacaaagatt |
26841070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 1e-46; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 264 - 437
Target Start/End: Complemental strand, 31685251 - 31685076
Alignment:
| Q |
264 |
ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctccctt-gtt |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||| ||| ||||| |||||||| || |
|
|
| T |
31685251 |
ataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagattcaacggcctcccttattt |
31685152 |
T |
|
| Q |
362 |
tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgatt |
437 |
Q |
| |
|
|| ||| ||||||||||||||||| | || ||||||||||| ||||||||| ||||||| |||||||||||||| |
|
|
| T |
31685151 |
tggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaataaagattagatataagtatgatt |
31685076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 264 - 436
Target Start/End: Original strand, 53973233 - 53973407
Alignment:
| Q |
264 |
ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt |
361 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||| | |||||||||||||| ||||||||| ||||||||| || |
|
|
| T |
53973233 |
ataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatgagatgcaggcttagccaaatgatgagatccaacggcctcccttgatt |
53973332 |
T |
|
| Q |
362 |
tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat |
436 |
Q |
| |
|
|| ||| ||||||||||||||||| | || ||| |||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
53973333 |
tggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagtatgat |
53973407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 261 - 436
Target Start/End: Complemental strand, 17681944 - 17681767
Alignment:
| Q |
261 |
tgtataggaaatatacatcaaatttgaaagtttgactcaa-attagatcaaag-atgagatgcatgtttagccaaatgatgcgatccaacgacctccctt |
358 |
Q |
| |
|
||||| |||||||||||| |||||| ||| |||||||||| |||||||||||| |||||||||||| ||| |||||||||| ||||||||| || ||||| |
|
|
| T |
17681944 |
tgtatgggaaatatacattaaatttaaaaatttgactcaagattagatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacggcccccctt |
17681845 |
T |
|
| Q |
359 |
gtttgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat |
436 |
Q |
| |
|
||||| ||| ||||||||||||||||| | || |||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
17681844 |
gtttggagccaaaaccatttaggtttagggtttgcaaaatcattaacaatgttaacaaagattagatataagtatgat |
17681767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 264 - 421
Target Start/End: Original strand, 19882058 - 19882217
Alignment:
| Q |
264 |
ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt |
361 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||| |||||||||||||| ||||||||| |||||||| || |
|
|
| T |
19882058 |
ataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggtctcccttgttt |
19882157 |
T |
|
| Q |
362 |
tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagatt |
421 |
Q |
| |
|
|| ||| ||||||||||||||||| | |||||| |||||| ||||||||||||||||| |
|
|
| T |
19882158 |
tggagccaaaaccatttaggtttagggtttacaatttcattagcaatgttaacaaagatt |
19882217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 264 - 437
Target Start/End: Complemental strand, 37982523 - 37982348
Alignment:
| Q |
264 |
ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt |
361 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||| ||| ||||||||||||| |||||||||||||| ||||||||| |||||||| || |
|
|
| T |
37982523 |
ataggaaatatacatcaaatttgaaaatttgactcagattagattaaaggatgagatgcatgcttagccaaatgatgagatccaacggtctcccttgttt |
37982424 |
T |
|
| Q |
362 |
tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgatt |
437 |
Q |
| |
|
|| ||| ||||||||||||||||| | || ||| |||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
37982423 |
tggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagtatgatt |
37982348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 649 - 751
Target Start/End: Complemental strand, 40050698 - 40050596
Alignment:
| Q |
649 |
tatttatgaatttatttatcggaaagtccctaaaggactcgttgatttgattatttatgatgaatgatacgtttttattgaattacttaatgcttaatta |
748 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||| || ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
40050698 |
tatttatgaatttatttatcgaaaagtcgttaaaggattcattgatttgattatttatgaagaatgatacgtttttattgaattaattaatgcttaatta |
40050599 |
T |
|
| Q |
749 |
aaa |
751 |
Q |
| |
|
||| |
|
|
| T |
40050598 |
aaa |
40050596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 299 - 436
Target Start/End: Original strand, 12538618 - 12538756
Alignment:
| Q |
299 |
aaattagatcaaag-atgagatgcatgtttagccaaatgatgcgatccaacgacctcccttgtttgaagcaaaaaccatttaggtttaatggttacaaag |
397 |
Q |
| |
|
|||||||||||||| ||| |||||||| |||||||||||||| ||||||||| ||||||||||||| ||| ||||||||||||||||| | || |||| |
|
|
| T |
12538618 |
aaattagatcaaaggatgtgatgcatgcttagccaaatgatgagatccaacggcctcccttgtttggagccaaaaccatttaggtttagggtttgcaaaa |
12538717 |
T |
|
| Q |
398 |
tcattaacaatgttaacaaagattgaatataagtatgat |
436 |
Q |
| |
|
|||||| || ||||||||||||| ||||||||||||| |
|
|
| T |
12538718 |
tcattagaaaggttaacaaagattagatataagtatgat |
12538756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 748 - 848
Target Start/End: Complemental strand, 40050572 - 40050472
Alignment:
| Q |
748 |
aaaaaattccttttcagaaaaagaaagaagtgccgaattttagaaatctccccttatacaagggatttgattgataagaattaatgcaccaaactttact |
847 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||| |||||| |||||| |||| |||||| |
|
|
| T |
40050572 |
aaaaaattccttttcagaaaaagaaataaaaaccgaattttagaaatctcccgttatacaagggatttgattgagaagaatcaatgcatcaaaatttact |
40050473 |
T |
|
| Q |
848 |
t |
848 |
Q |
| |
|
| |
|
|
| T |
40050472 |
t |
40050472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 295 - 436
Target Start/End: Complemental strand, 2550079 - 2549937
Alignment:
| Q |
295 |
actcaaattagatcaaag-atgagatgcatgtttagccaaatgatgcgatccaacgacctcccttgttt-gaagcaaaaaccatttaggtttaatggtta |
392 |
Q |
| |
|
||||| |||| ||||||| |||||||||||| ||||||||||||| ||||||||| |||||||||||| | ||| |||| |||||||||||| | || |
|
|
| T |
2550079 |
actcagattaaatcaaaggatgagatgcatgcttagccaaatgata-gatccaacggcctcccttgttttggagccaaaatcatttaggtttagggtttg |
2549981 |
T |
|
| Q |
393 |
caaagtcattaacaatgttaacaaagattgaatataagtatgat |
436 |
Q |
| |
|
||||||||||| ||||||||| |||||| ||||||||||||| |
|
|
| T |
2549980 |
caaagtcattagcaatgttaattaagattagatataagtatgat |
2549937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 297 - 437
Target Start/End: Original strand, 24761878 - 24762020
Alignment:
| Q |
297 |
tcaaattagatcaaag-atgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tttgaagcaaaaaccatttaggtttaatggttaca |
394 |
Q |
| |
|
|||||||||||||||| |||||||||||| | |||||||||||| ||||||||| | | ||| |||| ||| ||||||||||||||||| | || || |
|
|
| T |
24761878 |
tcaaattagatcaaaggatgagatgcatgctgagccaaatgatgagatccaacggtcagcattgttttggagccaaaaccatttaggtttagggtttgca |
24761977 |
T |
|
| Q |
395 |
aagtcattaacaatgttaacaaagattgaatataagtatgatt |
437 |
Q |
| |
|
||||||||| ||||||||| || |||| |||||||||||||| |
|
|
| T |
24761978 |
aagtcattagcaatgttaagaaggattagatataagtatgatt |
24762020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 297 - 436
Target Start/End: Complemental strand, 24816056 - 24815915
Alignment:
| Q |
297 |
tcaaattagatcaaag-atgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tttgaagcaaaaaccatttaggtttaatggttaca |
394 |
Q |
| |
|
|||||||||||||||| |||||||||||| | |||||||||||| ||||||||| || | | | |||| ||| ||||||||||||||||| | || || |
|
|
| T |
24816056 |
tcaaattagatcaaaggatgagatgcatgctgagccaaatgatgagatccaacggccagcatcgttttggagccaaaaccatttaggtttagggtttgca |
24815957 |
T |
|
| Q |
395 |
aagtcattaacaatgttaacaaagattgaatataagtatgat |
436 |
Q |
| |
|
||||||||| ||||||||| || |||| ||||||||||||| |
|
|
| T |
24815956 |
aagtcattagcaatgttaagaaggattagatataagtatgat |
24815915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 297 - 349
Target Start/End: Original strand, 53027732 - 53027785
Alignment:
| Q |
297 |
tcaaattagatcaaag-atgagatgcatgtttagccaaatgatgcgatccaacg |
349 |
Q |
| |
|
|||||||||||||||| |||||||||||| | |||||||||||| ||||||||| |
|
|
| T |
53027732 |
tcaaattagatcaaaggatgagatgcatgctgagccaaatgatgagatccaacg |
53027785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 876 - 929
Target Start/End: Complemental strand, 40050475 - 40050421
Alignment:
| Q |
876 |
acttaatacata--tttttaagatttgggcctcaaaatacttataaaatacaacaa |
929 |
Q |
| |
|
|||||||||||| |||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
40050475 |
acttaatacatagatttttaagatttggtc-tcaaaatacttataaaatacaacaa |
40050421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 6e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 268 - 436
Target Start/End: Original strand, 29863312 - 29863482
Alignment:
| Q |
268 |
gaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tttgaa |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| | |||||||||||| ||||||||| ||||||||| |||| | |
|
|
| T |
29863312 |
gaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgctcagccaaatgatgagatccaacggcctcccttgttttgga |
29863411 |
T |
|
| Q |
366 |
gcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat |
436 |
Q |
| |
|
|| ||||||||||||||||| | || ||||||||| | ||||||||||||||||| ||||||||||||| |
|
|
| T |
29863412 |
gccaaaaccatttaggtttacggtttgcaaagtcatgagcaatgttaacaaagattagatataagtatgat |
29863482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 393 - 437
Target Start/End: Complemental strand, 12506479 - 12506435
Alignment:
| Q |
393 |
caaagtcattaacaatgttaacaaagattgaatataagtatgatt |
437 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
12506479 |
caaagtcattagcaatgttaacaaagattagatataagtatgatt |
12506435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 4e-44; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 264 - 421
Target Start/End: Original strand, 33045378 - 33045537
Alignment:
| Q |
264 |
ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctccctt-gtt |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||| |||||||||| ||||||||| |||||||| || |
|
|
| T |
33045378 |
ataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacggcctcccttattt |
33045477 |
T |
|
| Q |
362 |
tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagatt |
421 |
Q |
| |
|
|| ||| ||||||||||||||||| | || ||||||||||| ||||||||||||||||| |
|
|
| T |
33045478 |
tggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaacaaagatt |
33045537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 313 - 436
Target Start/End: Complemental strand, 10092636 - 10092512
Alignment:
| Q |
313 |
atgagatgcatgtttagccaaatgatgcgatccaacgacctcccttgttt-gaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgtt |
411 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||| |||||||||||| | ||| |||||||||||| |||| | || ||||||||||||||||||| |
|
|
| T |
10092636 |
atgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagggtttgcaaagtcattaacaatgtt |
10092537 |
T |
|
| Q |
412 |
aacaaagattgaatataagtatgat |
436 |
Q |
| |
|
|||||||||| ||||||||||||| |
|
|
| T |
10092536 |
aacaaagattagatataagtatgat |
10092512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 326 - 437
Target Start/End: Complemental strand, 3065808 - 3065697
Alignment:
| Q |
326 |
ttagccaaatgatgcgatccaacgacctcccttgtttgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaat |
425 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||| ||| ||||||||||||||||| | || ||||||||||| | ||||||||||||||| || |
|
|
| T |
3065808 |
ttagccaaatgatgagatccaacggtctcccttgtttggagccaaaaccatttaggtttagggtttgcaaagtcattagccatgttaacaaagattagat |
3065709 |
T |
|
| Q |
426 |
ataagtatgatt |
437 |
Q |
| |
|
|||||||||||| |
|
|
| T |
3065708 |
ataagtatgatt |
3065697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 301 - 421
Target Start/End: Complemental strand, 8976541 - 8976419
Alignment:
| Q |
301 |
attagatcaaag-atgagatgcatgtttagccaaatgatgcgatccaacgacctccctt-gtttgaagcaaaaaccatttaggtttaatggttacaaagt |
398 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||| ||| ||||||||| ||||||| |||| ||| ||||||||||||||||| | || ||||| |
|
|
| T |
8976541 |
attagatcaaaggatgagatgcatgtttagctaaataatgagatccaacggtctcccttattttggagccaaaaccatttaggtttagagtttgtaaagt |
8976442 |
T |
|
| Q |
399 |
cattaacaatgttaacaaagatt |
421 |
Q |
| |
|
||||| |||| |||||||||||| |
|
|
| T |
8976441 |
cattagcaatattaacaaagatt |
8976419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 358 - 437
Target Start/End: Complemental strand, 16246780 - 16246701
Alignment:
| Q |
358 |
tgtttgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgatt |
437 |
Q |
| |
|
|||||| ||| ||||||||||||| ||| | || ||||||||||| ||||||| ||||||||| |||||||||||||| |
|
|
| T |
16246780 |
tgtttggagccaaaaccatttaggattagggtttgcaaagtcattagcaatgttcacaaagattagatataagtatgatt |
16246701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 259 - 295
Target Start/End: Complemental strand, 10092677 - 10092641
Alignment:
| Q |
259 |
ggtgtataggaaatatacatcaaatttgaaagtttga |
295 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10092677 |
ggtgcataggaaatatacatcaaatttgaaagtttga |
10092641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 358 - 421
Target Start/End: Original strand, 30908412 - 30908475
Alignment:
| Q |
358 |
tgtttgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagatt |
421 |
Q |
| |
|
|||||| ||| |||||||||||| |||| | || ||||||||||| ||||||||||||||||| |
|
|
| T |
30908412 |
tgtttggagccaaaaccatttagatttagggtttgcaaagtcattagcaatgttaacaaagatt |
30908475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 393 - 435
Target Start/End: Original strand, 4660253 - 4660295
Alignment:
| Q |
393 |
caaagtcattaacaatgttaacaaagattgaatataagtatga |
435 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
4660253 |
caaagtcattagcaatgttaacaaagattatatataagtatga |
4660295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 91; Significance: 1e-43; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 264 - 436
Target Start/End: Original strand, 11581 - 11755
Alignment:
| Q |
264 |
ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctcccttg-tt |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||| ||| |||||||||| ||||||||| ||||||||| || |
|
|
| T |
11581 |
ataggaaatatacatcaaatttgaaagtttgactcagattaaatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacggcctcccttgttt |
11680 |
T |
|
| Q |
362 |
tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat |
436 |
Q |
| |
|
|| || ||||||| ||||||||| | || ||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
11681 |
tggagtcaaaaccagttaggtttagggtttgcaaagtcattagcaatgttaacaaagattagatataagtatgat |
11755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 83; Significance: 8e-39; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 264 - 436
Target Start/End: Complemental strand, 828 - 654
Alignment:
| Q |
264 |
ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaa-gatgagatgcatgtttagccaaatgatgcgatccaacgacctccctt-gtt |
361 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||| |||||||||||||| ||||||||| |||||||| || |
|
|
| T |
828 |
ataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttattt |
729 |
T |
|
| Q |
362 |
tgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgat |
436 |
Q |
| |
|
|| || ||||||||||||||||| | || ||| |||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
728 |
tggagtcaaaaccatttaggtttagggtttgcaatttcattagcaatgttaacaaagatcagatataagtatgat |
654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 83; Significance: 8e-39; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 285 - 437
Target Start/End: Complemental strand, 27563 - 27409
Alignment:
| Q |
285 |
tgaaagtttgac-tcaaattagatcaaag-atgagatgcatgtttagccaaatgatgcgatccaacgacctcccttgtttgaagcaaaaaccatttaggt |
382 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||| |||||||||||||| ||||||||| ||||||||||||| ||| |||||||||||||| |
|
|
| T |
27563 |
tgaaagtttgaagtcaaattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgtttggagccaaaaccatttaggt |
27464 |
T |
|
| Q |
383 |
ttaatggttacaaagtcattaacaatgttaacaaagattgaatataagtatgatt |
437 |
Q |
| |
|
||| | || |||| |||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
27463 |
ttagggtttgcaaaatcattagcaatgttaacaaagattagatataagtatgatt |
27409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0157 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 393 - 437
Target Start/End: Original strand, 13998 - 14042
Alignment:
| Q |
393 |
caaagtcattaacaatgttaacaaagattgaatataagtatgatt |
437 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
13998 |
caaagtcattagcaatgttaacaaagattagatataagtatgatt |
14042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 358 - 432
Target Start/End: Complemental strand, 50990985 - 50990911
Alignment:
| Q |
358 |
tgtttgaagcaaaaaccatttaggtttaatggttacaaagtcattaacaatgttaacaaagattgaatataagta |
432 |
Q |
| |
|
|||||| ||| ||||||||||||||||| | || |||||| || | ||||||||||||||||| ||||||||| |
|
|
| T |
50990985 |
tgtttggagccaaaaccatttaggtttagggtttgcaaagttatcagcaatgttaacaaagattagatataagta |
50990911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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