View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4624-Insertion-2 (Length: 631)
Name: NF4624-Insertion-2
Description: NF4624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4624-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 281 - 627
Target Start/End: Complemental strand, 239637 - 239290
Alignment:
| Q |
281 |
acttcctttgcttctgtcatgagataataggtcggacaaatatttcagaaatttgaatgccgtgatagctctaatggaggtattattcgcaatgttgtcc |
380 |
Q |
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| T |
239637 |
acttcctttgcttctgtcatgagataataggtcggacaaatatttcagaaatttgaatgccgtcatatctctaatggaggtattattcgcaatgttgtcc |
239538 |
T |
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| Q |
381 |
gctggagtattcctaatttccttgaggtatttccctttacttttt-actttcttacttgccttcttgcaatcaacttcctaaagttcagactatggaatt |
479 |
Q |
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| T |
239537 |
gctggagtattcctaatttccttgaggtatttccctttacttttttactttcttacttgccttcttgcaatcaacttcctaaagttcagactatggaatt |
239438 |
T |
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| Q |
480 |
gtgacttccccatataactgtcatcattcttaaagttgtctattgtttcattcattcattccccctcaatttctgcaatatcatgcacagtttagctact |
579 |
Q |
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| T |
239437 |
gtgacttccccatataactgtcatcattcttaaagttgtctattgtttcattcattcattccccctcaatttctgcaatatcatgcacagtttagctact |
239338 |
T |
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| Q |
580 |
cctcaattgatacttgattattccttcttagagttcgatgtgccaaaa |
627 |
Q |
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| T |
239337 |
cctcaattcatacttgattattctttcttagagttcaatgtgccaaaa |
239290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 8 - 188
Target Start/End: Complemental strand, 239910 - 239734
Alignment:
| Q |
8 |
ctattttcattcaatttcgagcattctttctttctttctttataatcaatcatcaatgtcaggtgaatgtggaaggaagtaacatgggtgacccaattga |
107 |
Q |
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| T |
239910 |
ctattttcattcaatttcgagcattctttctttcttt----ataatcaatcatcaatgtcaggtgaatgtggaaggaagtaacatgggtgacccaattga |
239815 |
T |
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| Q |
108 |
ttttaacaagttggatggaacttggcgcttgcagtatacttccgctcctgatgttctcattctcttccaagctgctgctac |
188 |
Q |
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| T |
239814 |
ttttaacaagttggatggaacttggcgcttgcagtatacttccgctcctgatgttctcattctcttccaagctgctgctac |
239734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 590 - 628
Target Start/End: Complemental strand, 228469 - 228431
Alignment:
| Q |
590 |
tacttgattattccttcttagagttcgatgtgccaaaaa |
628 |
Q |
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| T |
228469 |
tacttgattattctttcttagagttcaatgtgccaaaaa |
228431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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