View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4624-Insertion-3 (Length: 390)

Name: NF4624-Insertion-3
Description: NF4624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4624-Insertion-3
NF4624-Insertion-3
[»] chr3 (12 HSPs)
chr3 (139-247)||(36244088-36244196)
chr3 (269-390)||(24744105-24744226)
chr3 (264-390)||(13103762-13103888)
chr3 (264-384)||(26526411-26526531)
chr3 (7-75)||(36243956-36244024)
chr3 (160-247)||(40934789-40934876)
chr3 (199-246)||(29749333-29749380)
chr3 (199-245)||(47393897-47393943)
chr3 (161-211)||(16354-16404)
chr3 (205-247)||(54516964-54517006)
chr3 (182-247)||(48058277-48058342)
chr3 (199-239)||(55058525-55058565)
[»] scaffold0504 (1 HSPs)
scaffold0504 (264-390)||(5485-5611)
[»] chr4 (9 HSPs)
chr4 (264-390)||(5054597-5054723)
chr4 (264-390)||(10225754-10225880)
chr4 (269-390)||(19135210-19135331)
chr4 (264-390)||(20169457-20169583)
chr4 (199-247)||(19638105-19638153)
chr4 (199-245)||(49574742-49574788)
chr4 (182-247)||(21436560-21436625)
chr4 (198-247)||(43428478-43428527)
chr4 (196-243)||(33581132-33581179)
[»] chr6 (10 HSPs)
chr6 (264-390)||(26337772-26337898)
chr6 (199-247)||(20508613-20508661)
chr6 (205-247)||(32261204-32261246)
chr6 (196-243)||(4279092-4279139)
chr6 (196-243)||(4284344-4284391)
chr6 (196-247)||(15997530-15997581)
chr6 (182-247)||(20756390-20756455)
chr6 (345-390)||(22027553-22027598)
chr6 (178-229)||(12796007-12796058)
chr6 (331-383)||(13052125-13052172)
[»] chr5 (10 HSPs)
chr5 (264-390)||(19683916-19684042)
chr5 (264-390)||(1379392-1379518)
chr5 (264-390)||(19425168-19425294)
chr5 (264-390)||(20090020-20090146)
chr5 (264-390)||(30821610-30821736)
chr5 (264-390)||(30665856-30665982)
chr5 (182-245)||(12696487-12696550)
chr5 (199-247)||(14098498-14098546)
chr5 (199-247)||(35424268-35424316)
chr5 (214-247)||(26016226-26016259)
[»] chr2 (15 HSPs)
chr2 (264-390)||(34508230-34508356)
chr2 (264-390)||(11751154-11751280)
chr2 (264-390)||(37014869-37014995)
chr2 (264-390)||(43801973-43802099)
chr2 (268-384)||(44337621-44337737)
chr2 (264-384)||(1735920-1736040)
chr2 (264-390)||(36630526-36630652)
chr2 (264-390)||(6001216-6001342)
chr2 (161-247)||(12332003-12332089)
chr2 (203-245)||(30784880-30784922)
chr2 (206-247)||(25616852-25616893)
chr2 (165-245)||(6257731-6257811)
chr2 (161-236)||(6254932-6255007)
chr2 (204-247)||(30266323-30266366)
chr2 (204-244)||(45631232-45631272)
[»] chr8 (8 HSPs)
chr8 (264-390)||(42613017-42613143)
chr8 (264-390)||(4391271-4391397)
chr8 (183-247)||(9044188-9044252)
chr8 (161-245)||(37811173-37811257)
chr8 (199-245)||(36697686-36697732)
chr8 (199-247)||(16723685-16723733)
chr8 (182-247)||(28540348-28540413)
chr8 (203-247)||(24287616-24287660)
[»] chr7 (9 HSPs)
chr7 (264-390)||(37170049-37170175)
chr7 (264-335)||(46487895-46487966)
chr7 (196-243)||(14253955-14254002)
chr7 (196-243)||(14255608-14255655)
chr7 (202-247)||(19068467-19068512)
chr7 (202-247)||(19069252-19069297)
chr7 (199-245)||(43448517-43448563)
chr7 (345-390)||(46488009-46488054)
chr7 (199-244)||(29064744-29064789)
[»] chr1 (10 HSPs)
chr1 (264-390)||(6407633-6407759)
chr1 (161-246)||(49359642-49359727)
chr1 (161-246)||(49361937-49362022)
chr1 (161-247)||(4433929-4434015)
chr1 (161-247)||(25665724-25665810)
chr1 (162-247)||(25670606-25670691)
chr1 (199-244)||(36391353-36391398)
chr1 (199-247)||(2071470-2071518)
chr1 (199-247)||(14237381-14237429)
chr1 (203-247)||(32994025-32994069)
[»] scaffold0159 (1 HSPs)
scaffold0159 (161-247)||(28156-28242)
[»] scaffold1370 (1 HSPs)
scaffold1370 (204-247)||(204-247)


Alignment Details
Target: chr3 (Bit Score: 101; Significance: 6e-50; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 139 - 247
Target Start/End: Original strand, 36244088 - 36244196
Alignment:
Q  139 ccacgtgaccttttgagtgtgtttttaatctcagccatttaactaatccaatggtcaatgtttaatcctctcacgctctcatttaaaaagtcatctcatt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  36244088 ccacgtgaccttttgagtgtgtttttaatctcagccatttaactaatccaatggtcaatgtttaatcctctcaccctctcatttaaaaaatcatctcatt 36244187  T
Q  239 tgaaatgcc 247  Q
    |||||||||    
T  36244188 tgaaatgcc 36244196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 269 - 390
Target Start/End: Complemental strand, 24744226 - 24744105
Alignment:
Q  269 ttgttaaccttacactaaaacttctctcttgtgccagtttaaatggagaccatacaaaaaggttccacataattttcctgaagactattgggattggact 368  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||||||||||||||| ||||||||    
T  24744226 ttgttaaccttacactaaaagttctctcttgtgccagtttaaatggagaccatacaagaatgttccacacaatttgcctgaagactattggaattggact 24744127  T
Q  369 gcaacaacttaccttacatgtt 390  Q
    |||||||||||||||| |||||    
T  24744126 gcaacaacttaccttatatgtt 24744105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 264 - 390
Target Start/End: Complemental strand, 13103888 - 13103762
Alignment:
Q  264 caaaattgttaaccttacactaaaacttctctcttgtgccagtttaaatggagaccatacaaaaaggttccacataattttcctgaagactattgggatt 363  Q
    ||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||| || |||||||| ||||| ||||||||||||||||| |    
T  13103888 caaaattgttaaccttatactacaacttctctcttctgccagtttaaatggagaccatacaagaatgttccacacaatttgcctgaagactattgggagt 13103789  T
Q  364 ggactgcaacaacttaccttacatgtt 390  Q
    ||||||||||||||||||||| |||||    
T  13103788 ggactgcaacaacttaccttatatgtt 13103762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 264 - 384
Target Start/End: Original strand, 26526411 - 26526531
Alignment:
Q  264 caaaattgttaaccttacactaaaacttctctcttgtgccagtttaaatggagaccatacaaaaaggttccacataattttcctgaagactattgggatt 363  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||| | ||    ||||||||||||||||| |    
T  26526411 caaaattgttagccttacactacaacttctctcttgtgccagtttaaatggagaccttacaagaaggttccatacaaccagcctgaagactattgggaat 26526510  T
Q  364 ggactgcaacaacttacctta 384  Q
    ||||  |||||||||||||||    
T  26526511 ggacaacaacaacttacctta 26526531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 36243956 - 36244024
Alignment:
Q  7 actttgttgggaggaagctacatagaagaatcaagaataagccatagtaacgttttacgagagagtggg 75  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  36243956 actttgttgggaggaagctacatagaagaatcaagaatgagtcatagtaacgttttacgagagagtggg 36244024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 247
Target Start/End: Original strand, 40934789 - 40934876
Alignment:
Q  160 tttttaatctcagccatttaactaatccaatggtcaatgtttaatcctctcacgctctcatttaaaaagtcatctcatttgaaatgcc 247  Q
    ||||||||| ||||||| || | |||||||||| || |||||||||||||||| ||||||||||||| ||| ||| ||||||||||||    
T  40934789 tttttaatcacagccatgtatccaatccaatggccattgtttaatcctctcaccctctcatttaaaatgtcctcttatttgaaatgcc 40934876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 29749333 - 29749380
Alignment:
Q  199 tttaatcctctcacgctctcatttaaaaagtcatctcatttgaaatgc 246  Q
    |||| ||||||||| ||||||||||||||||| |||||||||||||||    
T  29749333 tttactcctctcaccctctcatttaaaaagtcctctcatttgaaatgc 29749380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 245
Target Start/End: Complemental strand, 47393943 - 47393897
Alignment:
Q  199 tttaatcctctcacgctctcatttaaaaagtcatctcatttgaaatg 245  Q
    |||||||||||||| |||||||||| |||||| ||||||||||||||    
T  47393943 tttaatcctctcaccctctcatttataaagtcctctcatttgaaatg 47393897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 16404 - 16354
Alignment:
Q  161 ttttaatctcagccatttaactaatccaatggtcaatgtttaatcctctca 211  Q
    |||||||| ||||||| |||||||||||||||||| | ||| |||||||||    
T  16404 ttttaatcacagccatctaactaatccaatggtcagtattttatcctctca 16354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 247
Target Start/End: Complemental strand, 54517006 - 54516964
Alignment:
Q  205 cctctcacgctctcatttaaaaagtcatctcatttgaaatgcc 247  Q
    |||||||| |||||||||||||| || ||||||||||||||||    
T  54517006 cctctcaccctctcatttaaaaactcctctcatttgaaatgcc 54516964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 48058342 - 48058277
Alignment:
Q  182 taatccaatggtcaatgtttaatcctctcacgctctcatttaaaaagtcatctcatttgaaatgcc 247  Q
    ||||| ||||| |||  |||||||||||||| ||||||||| ||||||| ||||| |||| |||||    
T  48058342 taatctaatggacaagatttaatcctctcaccctctcattttaaaagtcctctcacttgatatgcc 48058277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 55058565 - 55058525
Alignment:
Q  199 tttaatcctctcacgctctcatttaaaaagtcatctcattt 239  Q
    |||||||||||||| ||||||||||||| ||| ||||||||    
T  55058565 tttaatcctctcaccctctcatttaaaaggtcctctcattt 55058525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 264 - 390
Target Start/End: Original strand, 5485 - 5611
Alignment:
Q  264 caaaattgttaaccttacactaaaacttctctcttgtgccagtttaaatggagaccatacaaaaaggttccacataattttcctgaagactattgggatt 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||| | ||||| |||||||||||||||||||    
T  5485 caaaattgttaaccttacactaaaacttctctcttgtgccagtttaaatggagaccatgcaagaatgttccagacaatttgcctgaagactattgggatt 5584  T
Q  364 ggactgcaacaacttaccttacatgtt 390  Q
    ||||||||||||||||||||| |||||    
T  5585 ggactgcaacaacttaccttatatgtt 5611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 264 - 390
Target Start/End: Complemental strand, 5054723 - 5054597
Alignment:
Q  264 caaaattgttaaccttacactaaaacttctctcttgtgccagtttaaatggagaccatacaaaaaggttccacataattttcctgaagactattgggatt 363  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||| | ||||| |||||||||||||||||||    
T  5054723 caaaattgttaaccttacactacaacttctctcttgtgccagtttaaatggagatcatacaagaaggttccatacaatttgcctgaagactattgggatt 5054624  T
Q  364 ggactgcaacaacttaccttacatgtt 390  Q
    |||| |||||||||||||||| |||||    
T  5054623 ggacagcaacaacttaccttatatgtt 5054597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 264 - 390
Target Start/End: Complemental strand, 10225880 - 10225754
Alignment:
Q  264 caaaattgttaaccttacactaaaacttctctcttgtgccagtttaaatggagaccatacaaaaaggttccacataattttcctgaagactattgggatt 363  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||| |    
T  10225880 caaaattgttaaccttacactacaacttctctcttctgccagtttaaatggagaccatacaagaatgttccacacaattttcctgaagactattgggagt 10225781  T
Q  364 ggactgcaacaacttaccttacatgtt 390  Q
    |||||||||||||| |||||| |||||    
T  10225780 ggactgcaacaactcaccttatatgtt 10225754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 269 - 390
Target Start/End: Complemental strand, 19135331 - 19135210
Alignment:
Q  269 ttgttaaccttacactaaaacttctctcttgtgccagtttaaatggagaccatacaaaaaggttccacataattttcctgaagactattgggattggact 368  Q
    |||||||||||| |||| ||||||||||||  ||||||||||||||||||||||||| || |||||||| |||||  |||||||||||||||| ||||||    
T  19135331 ttgttaaccttatactacaacttctctcttcagccagtttaaatggagaccatacaagaatgttccacacaatttgtctgaagactattgggagtggact 19135232  T
Q  369 gcaacaacttaccttacatgtt 390  Q
    |||||||||||||||| |||||    
T  19135231 gcaacaacttaccttatatgtt 19135210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 264 - 390
Target Start/End: Complemental strand, 20169583 - 20169457
Alignment:
Q  264 caaaattgttaaccttacactaaaacttctctcttgtgccagtttaaatggagaccatacaaaaaggttccacataattttcctgaagactattgggatt 363  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || || ||||||||| | ||    ||||||||||||||||| |    
T  20169583 caaaattgttaaccttacactacaacttctctcttgtgccagtttaaatggagaccttataagaaggttccatacaaccagcctgaagactattgggaat 20169484  T
Q  364 ggactgcaacaacttaccttacatgtt 390  Q
    |||| |||||||||||||||| |||||    
T  20169483 ggacagcaacaacttaccttatatgtt 20169457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 19638153 - 19638105
Alignment:
Q  199 tttaatcctctcacgctctcatttaaaaagtcatctcatttgaaatgcc 247  Q
    |||||||||||||| |||||||||||||| || ||||||||||||||||    
T  19638153 tttaatcctctcaccctctcatttaaaaattcctctcatttgaaatgcc 19638105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 245
Target Start/End: Original strand, 49574742 - 49574788
Alignment:
Q  199 tttaatcctctcacgctctcatttaaaaagtcatctcatttgaaatg 245  Q
    |||| ||||||||| ||||||||||||||||| ||||||||||||||    
T  49574742 tttactcctctcaccctctcatttaaaaagtcctctcatttgaaatg 49574788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 21436625 - 21436560
Alignment:
Q  182 taatccaatggtcaatgtttaatcctctcacgctctcatttaaaaagtcatctcatttgaaatgcc 247  Q
    ||||||||||| || | ||| || ||||||| |||||||||||||| || ||||||||||||||||    
T  21436625 taatccaatggccactatttcatgctctcaccctctcatttaaaaactcctctcatttgaaatgcc 21436560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 43428527 - 43428478
Alignment:
Q  198 gtttaatcctctcacgctctcatttaaaaagtcatctcatttgaaatgcc 247  Q
    |||| |||||||||| ||||||||||||||||| |||||||| |||||||    
T  43428527 gtttcatcctctcaccctctcatttaaaaagtcctctcatttaaaatgcc 43428478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 196 - 243
Target Start/End: Original strand, 33581132 - 33581179
Alignment:
Q  196 atgtttaatcctctcacgctctcatttaaaaagtcatctcatttgaaa 243  Q
    |||||| |||||||||| |||||||||||||| || ||||||||||||    
T  33581132 atgtttcatcctctcaccctctcatttaaaaactcctctcatttgaaa 33581179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 264 - 390
Target Start/End: Original strand, 26337772 - 26337898
Alignment:
Q  264 caaaattgttaaccttacactaaaacttctctcttgtgccagtttaaatggagaccatacaaaaaggttccacataattttcctgaagactattgggatt 363  Q
    ||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||| || |||||||| ||||| ||||||||||||||||| |    
T  26337772 caaaattgttaaccttatactacaacttctctcttctgccagtttaaatggagaccatacaagaatgttccacacaatttgcctgaagactattgggagt 26337871  T
Q  364 ggactgcaacaacttaccttacatgtt 390  Q
    ||||||||||||||||||||| |||||    
T  26337872 ggactgcaacaacttaccttatatgtt 26337898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 20508661 - 20508613
Alignment:
Q  199 tttaatcctctcacgctctcatttaaaaagtcatctcatttgaaatgcc 247  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20508661 tttaatcctctcaccctctcatttaaaaagtcatctcatttgaaatgcc 20508613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 205 - 247
Target Start/End: Original strand, 32261204 - 32261246
Alignment:
Q  205 cctctcacgctctcatttaaaaagtcatctcatttgaaatgcc 247  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  32261204 cctctcaccctctcatttaaaaagtcatctcatttgaaatgcc 32261246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 4279139 - 4279092
Alignment:
Q  196 atgtttaatcctctcacgctctcatttaaaaagtcatctcatttgaaa 243  Q
    |||||| |||||||||| ||||||||||||||||| ||||||||||||    
T  4279139 atgtttcatcctctcaccctctcatttaaaaagtcctctcatttgaaa 4279092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 243
Target Start/End: Original strand, 4284344 - 4284391
Alignment:
Q  196 atgtttaatcctctcacgctctcatttaaaaagtcatctcatttgaaa 243  Q
    |||||| |||||||||| ||||||||||||||||| ||||||||||||    
T  4284344 atgtttcatcctctcaccctctcatttaaaaagtcctctcatttgaaa 4284391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 247
Target Start/End: Original strand, 15997530 - 15997581
Alignment:
Q  196 atgtttaatcctctcacgctctcatttaaaaagtcatctcatttgaaatgcc 247  Q
    |||||| |||||||||| |||||||||||||| || ||||||||||||||||    
T  15997530 atgtttcatcctctcaccctctcatttaaaaactcctctcatttgaaatgcc 15997581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 20756390 - 20756455
Alignment:
Q  182 taatccaatggtcaatgtttaatcctctcacgctctcatttaaaaagtcatctcatttgaaatgcc 247  Q
    ||||||||||| || | ||| || ||||||| |||||||||||||| || ||||||||||||||||    
T  20756390 taatccaatggccactatttcatgctctcaccctctcatttaaaaactcctctcatttgaaatgcc 20756455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 345 - 390
Target Start/End: Original strand, 22027553 - 22027598
Alignment:
Q  345 cctgaagactattgggattggactgcaacaacttaccttacatgtt 390  Q
    ||||||||||||||||| ||||| |||||||||||||||| |||||    
T  22027553 cctgaagactattgggaatggacagcaacaacttaccttatatgtt 22027598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 12796007 - 12796058
Alignment:
Q  178 taactaatccaatggtcaatgtttaatcctctcacgctctcatttaaaaagt 229  Q
    |||||||||||||||||| |||||  ||||||||  ||||||||||||||||    
T  12796007 taactaatccaatggtcactgtttcttcctctcatcctctcatttaaaaagt 12796058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 383
Target Start/End: Original strand, 13052125 - 13052172
Alignment:
Q  331 ttccacataattttcctgaagactattgggattggactgcaacaacttacctt 383  Q
    ||||||| ||||||||||||||||||     ||||||||||||||||||||||    
T  13052125 ttccacacaattttcctgaagactat-----ttggactgcaacaacttacctt 13052172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 8e-37; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 264 - 390
Target Start/End: Original strand, 19683916 - 19684042
Alignment:
Q  264 caaaattgttaaccttacactaaaacttctctcttgtgccagtttaaatggagaccatacaaaaaggttccacataattttcctgaagactattgggatt 363  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||| | ||    ||||||||||||||||| |    
T  19683916 caaaattgttaaccttacactacaacttctctcttgtgccagtttaaatggagaccttacaagaaggttccatacaaccagcctgaagactattgggaat 19684015  T
Q  364 ggactgcaacaacttaccttacatgtt 390  Q
    |||| |||||||||||||||| |||||    
T  19684016 ggacagcaacaacttaccttatatgtt 19684042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 264 - 390
Target Start/End: Complemental strand, 1379518 - 1379392
Alignment:
Q  264 caaaattgttaaccttacactaaaacttctctcttgtgccagtttaaatggagaccatacaaaaaggttccacataattttcctgaagactattgggatt 363  Q
    |||||||||||||||||||||| | ||| |||||||||| |||||||||||||||||||||| || |||||||| || || |||||||| |||||||| |    
T  1379518 caaaattgttaaccttacactacatcttatctcttgtgctagtttaaatggagaccatacaagaatgttccacacaacttgcctgaagaatattgggagt 1379419  T
Q  364 ggactgcaacaacttaccttacatgtt 390  Q
    |||||||||||| |||||||| |||||    
T  1379418 ggactgcaacaagttaccttatatgtt 1379392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 264 - 390
Target Start/End: Original strand, 19425168 - 19425294
Alignment:
Q  264 caaaattgttaaccttacactaaaacttctctcttgtgccagtttaaatggagaccatacaaaaaggttccacataattttcctgaagactattgggatt 363  Q
    |||||||||||||||||||||| | ||| |||||||||| |||||||||||||||||||||| || |||||||| || || |||||||| |||||||| |    
T  19425168 caaaattgttaaccttacactacatcttatctcttgtgctagtttaaatggagaccatacaagaatgttccacacaacttgcctgaagaatattgggagt 19425267  T
Q  364 ggactgcaacaacttaccttacatgtt 390  Q
    |||||||||||| |||||||| |||||    
T  19425268 ggactgcaacaagttaccttatatgtt 19425294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 264 - 390
Target Start/End: Original strand, 20090020 - 20090146
Alignment:
Q  264 caaaattgttaaccttacactaaaacttctctcttgtgccagtttaaatggagaccatacaaaaaggttccacataattttcctgaagactattgggatt 363  Q
    |||||||||||||||||||||| | ||| |||||||||| |||||||||||||||||||||| || |||||||| || || |||||||| |||||||| |    
T  20090020 caaaattgttaaccttacactacatcttatctcttgtgctagtttaaatggagaccatacaagaatgttccacacaacttgcctgaagaatattgggagt 20090119  T
Q  364 ggactgcaacaacttaccttacatgtt 390  Q
    |||||||||||| |||||||| |||||    
T  20090120 ggactgcaacaagttaccttatatgtt 20090146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 264 - 390
Target Start/End: Complemental strand, 30821736 - 30821610
Alignment:
Q  264 caaaattgttaaccttacactaaaacttctctcttgtgccagtttaaatggagaccatacaaaaaggttccacataattttcctgaagactattgggatt 363  Q
    |||||||||||||||||||||| | ||| |||||||||| |||||||||||||||||||||| || |||||||| || || |||||||| |||||||| |    
T  30821736 caaaattgttaaccttacactacatcttatctcttgtgctagtttaaatggagaccatacaagaatgttccacacaacttgcctgaagaatattgggagt 30821637  T
Q  364 ggactgcaacaacttaccttacatgtt 390  Q
    |||||||||||| |||||||| |||||    
T  30821636 ggactgcaacaagttaccttatatgtt 30821610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 264 - 390
Target Start/End: Original strand, 30665856 - 30665982
Alignment:
Q  264 caaaattgttaaccttacactaaaacttctctcttgtgccagtttaaatggagaccatacaaaaaggttccacataattttcctgaagactattgggatt 363  Q
    ||||||| |||||  ||||||| |  |||||| |||| ||||||||| |||||||||||||| |  ||||||||  |||| ||||  |||||||||||||    
T  30665856 caaaattattaacaatacactatatattctcttttgtcccagtttaagtggagaccatacaagagagttccacacgatttgcctgctgactattgggatt 30665955  T
Q  364 ggactgcaacaacttaccttacatgtt 390  Q
    | ||||| ||||||||||||| |||||    
T  30665956 gtactgcgacaacttaccttatatgtt 30665982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 12696550 - 12696487
Alignment:
Q  182 taatccaatggtcaatgtttaatcctctcacgctctcatttaaaaagtcatctcatttgaaatg 245  Q
    ||||||| |||| | | ||| |||||||||| ||||||||||||||||||||||||||||||||    
T  12696550 taatccattggttattatttgatcctctcaccctctcatttaaaaagtcatctcatttgaaatg 12696487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 14098546 - 14098498
Alignment:
Q  199 tttaatcctctcacgctctcatttaaaaagtcatctcatttgaaatgcc 247  Q
    |||||||||||||| ||||||||||||||||| |||||||| |||||||    
T  14098546 tttaatcctctcaccctctcatttaaaaagtcctctcatttaaaatgcc 14098498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 35424316 - 35424268
Alignment:
Q  199 tttaatcctctcacgctctcatttaaaaagtcatctcatttgaaatgcc 247  Q
    |||| ||||||||| ||||||||| ||||||| ||||||||||||||||    
T  35424316 tttactcctctcaccctctcattttaaaagtcctctcatttgaaatgcc 35424268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 247
Target Start/End: Original strand, 26016226 - 26016259
Alignment:
Q  214 ctctcatttaaaaagtcatctcatttgaaatgcc 247  Q
    ||||||||||||||||| ||||||||||||||||    
T  26016226 ctctcatttaaaaagtcctctcatttgaaatgcc 26016259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 8e-37; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 264 - 390
Target Start/End: Original strand, 34508230 - 34508356
Alignment:
Q  264 caaaattgttaaccttacactaaaacttctctcttgtgccagtttaaatggagaccatacaaaaaggttccacataattttcctgaagactattgggatt 363  Q
    ||||||||||||||||| |||| || || |||||| |||||||||||||||||||||||||| || |||||||| ||||| ||||||||||||||||| |    
T  34508230 caaaattgttaaccttatactacaatttttctcttctgccagtttaaatggagaccatacaagaatgttccacacaatttgcctgaagactattgggagt 34508329  T
Q  364 ggactgcaacaacttaccttacatgtt 390  Q
    | ||||||||||||||||||| |||||    
T  34508330 gaactgcaacaacttaccttatatgtt 34508356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 264 - 390
Target Start/End: Original strand, 11751154 - 11751280
Alignment:
Q  264 caaaattgttaaccttacactaaaacttctctcttgtgccagtttaaatggagaccatacaaaaaggttccacataattttcctgaagactattgggatt 363  Q
    |||||||||||||||||||||| | ||| |||||||||| |||||||||||||||||||||| || |||||||| || || |||||||| |||||||| |    
T  11751154 caaaattgttaaccttacactacatcttatctcttgtgctagtttaaatggagaccatacaagaatgttccacacaacttgcctgaagaatattgggagt 11751253  T
Q  364 ggactgcaacaacttaccttacatgtt 390  Q
    |||||||||||| |||||||| |||||    
T  11751254 ggactgcaacaagttaccttatatgtt 11751280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 264 - 390
Target Start/End: Complemental strand, 37014995 - 37014869
Alignment:
Q  264 caaaattgttaaccttacactaaaacttctctcttgtgccagtttaaatggagaccatacaaaaaggttccacataattttcctgaagactattgggatt 363  Q
    |||||||||||||||||||||| | ||| |||||||||| |||||||||||||||||||||| || |||||||| || || |||||||| |||||||| |    
T  37014995 caaaattgttaaccttacactacatcttatctcttgtgctagtttaaatggagaccatacaagaatgttccacacaacttgcctgaagaatattgggagt 37014896  T
Q  364 ggactgcaacaacttaccttacatgtt 390  Q
    |||||||||||| |||||||| |||||    
T  37014895 ggactgcaacaagttaccttatatgtt 37014869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 264 - 390
Target Start/End: Complemental strand, 43802099 - 43801973
Alignment:
Q  264 caaaattgttaaccttacactaaaacttctctcttgtgccagtttaaatggagaccatacaaaaaggttccacataattttcctgaagactattgggatt 363  Q
    |||||||||||||||||||||| | ||| |||||||||| |||||||||||||||||||||| || |||||||| || || |||||||| |||||||| |    
T  43802099 caaaattgttaaccttacactacatcttatctcttgtgctagtttaaatggagaccatacaagaatgttccacacaacttgcctgaagaatattgggagt 43802000  T
Q  364 ggactgcaacaacttaccttacatgtt 390  Q
    |||||||||||| |||||||| |||||    
T  43801999 ggactgcaacaagttaccttatatgtt 43801973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 268 - 384
Target Start/End: Original strand, 44337621 - 44337737
Alignment:
Q  268 attgttaaccttacactaaaacttctctcttgtgccagtttaaatggagaccatacaaaaaggttccacataattttcctgaagactattgggattggac 367  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||| | ||    ||||||||||||||||| |||||    
T  44337621 attgttaaccttacactacaacttctctcttgtgccagtttaaatggagaccttacaagaaggttccatacaaccagcctgaagactattgggaatggac 44337720  T
Q  368 tgcaacaacttacctta 384  Q
     ||||||||||||||||    
T  44337721 agcaacaacttacctta 44337737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 264 - 384
Target Start/End: Complemental strand, 1736040 - 1735920
Alignment:
Q  264 caaaattgttaaccttacactaaaacttctctcttgtgccagtttaaatggagaccatacaaaaaggttccacataattttcctgaagactattgggatt 363  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||| | ||    ||||||||||||||||| |    
T  1736040 caaaattgttagccttacactacaacttctctcttgtgccagtttaaatggagaccttacaagaaggttccatacaaccagcctgaagactattgggaat 1735941  T
Q  364 ggactgcaacaacttacctta 384  Q
    ||||  |||||||||||||||    
T  1735940 ggacaacaacaacttacctta 1735920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 264 - 390
Target Start/End: Original strand, 36630526 - 36630652
Alignment:
Q  264 caaaattgttaaccttacactaaaacttctctcttgtgccagtttaaatggagaccatacaaaaaggttccacataattttcctgaagactattgggatt 363  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||| | ||    ||||||||||||||| | |    
T  36630526 caaaattgttaaccttacactacaacttctctcttgtgccagtttaaatggagaccttacaagaaggttccatacaaccagcctgaagactattggaaat 36630625  T
Q  364 ggactgcaacaacttaccttacatgtt 390  Q
    |||| |||||||| | ||||| |||||    
T  36630626 ggacagcaacaaccttccttatatgtt 36630652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 264 - 390
Target Start/End: Complemental strand, 6001342 - 6001216
Alignment:
Q  264 caaaattgttaaccttacactaaaacttctctcttgtgccagtttaaatggagaccatacaaaaaggttccacataattttcctgaagactattgggatt 363  Q
    ||||||| |||||  |||||||||  |||||| |||| |||||||||||||||||||||||| |  ||||||||  |||||||||  |||||||||||||    
T  6001342 caaaattattaacaatacactaaatattctcttttgtcccagtttaaatggagaccatacaagagagttccacacgattttcctgctgactattgggatt 6001243  T
Q  364 ggactgcaacaacttaccttacatgtt 390  Q
    | ||||||||||||||||||| |||||    
T  6001242 gtactgcaacaacttaccttatatgtt 6001216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 12332003 - 12332089
Alignment:
Q  161 ttttaatctcagccatttaactaatccaatggtcaatgtttaatcctctcacgctctcatttaaaaagtcatctcatttgaaatgcc 247  Q
    |||||||| ||||||| ||| ||||||||||| || ||||| ||||||| |  ||||||||| |||| || ||| ||||||||||||    
T  12332003 ttttaatcacagccatctaattaatccaatggccactgtttcatcctcttaacctctcattttaaaactcctcttatttgaaatgcc 12332089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 245
Target Start/End: Complemental strand, 30784922 - 30784880
Alignment:
Q  203 atcctctcacgctctcatttaaaaagtcatctcatttgaaatg 245  Q
    |||||||||| ||||||||||||||||| ||||||||||||||    
T  30784922 atcctctcaccctctcatttaaaaagtcctctcatttgaaatg 30784880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 247
Target Start/End: Complemental strand, 25616893 - 25616852
Alignment:
Q  206 ctctcacgctctcatttaaaaagtcatctcatttgaaatgcc 247  Q
    ||||||| ||||||||||||||||| ||||||||||||||||    
T  25616893 ctctcaccctctcatttaaaaagtcctctcatttgaaatgcc 25616852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 245
Target Start/End: Original strand, 6257731 - 6257811
Alignment:
Q  165 aatctcagccatttaactaatccaatggtcaatgtttaatcctctcacgctctcatttaaaaagtcatctcatttgaaatg 245  Q
    |||| ||||||| ||| ||||| || || ||  |||| ||||||||||  |||||||||||||||| ||||||||||||||    
T  6257731 aatcacagccatctaaataatctaaaggccacagtttcatcctctcaccttctcatttaaaaagtcctctcatttgaaatg 6257811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 6255007 - 6254932
Alignment:
Q  161 ttttaatctcagccatttaactaatccaatggtcaatgtttaatcctctcacgctctcatttaaaaagtcatctca 236  Q
    |||||||| || |||| | |||||| |||||||||  |||| | |||||||| ||||||||||||||||| |||||    
T  6255007 ttttaatcacaaccatcttactaattcaatggtcacagtttcaccctctcacactctcatttaaaaagtcctctca 6254932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 30266366 - 30266323
Alignment:
Q  204 tcctctcacgctctcatttaaaaagtcatctcatttgaaatgcc 247  Q
    ||||||||| ||||||||||||||||  ||||||||||||||||    
T  30266366 tcctctcaccctctcatttaaaaagtgctctcatttgaaatgcc 30266323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 45631272 - 45631232
Alignment:
Q  204 tcctctcacgctctcatttaaaaagtcatctcatttgaaat 244  Q
    ||||||||| |||||||||||||| | ||||||||||||||    
T  45631272 tcctctcaccctctcatttaaaaaattatctcatttgaaat 45631232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 264 - 390
Target Start/End: Original strand, 42613017 - 42613143
Alignment:
Q  264 caaaattgttaaccttacactaaaacttctctcttgtgccagtttaaatggagaccatacaaaaaggttccacataattttcctgaagactattgggatt 363  Q
    |||||||||||||||||||||| | ||| |||||||||| |||||||||||||||||||||| || |||||||| || || |||||||| |||||||| |    
T  42613017 caaaattgttaaccttacactacatcttatctcttgtgctagtttaaatggagaccatacaagaatgttccacacaacttgcctgaagaatattgggagt 42613116  T
Q  364 ggactgcaacaacttaccttacatgtt 390  Q
    |||||||||||| |||||||| |||||    
T  42613117 ggactgcaacaagttaccttatatgtt 42613143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 264 - 390
Target Start/End: Original strand, 4391271 - 4391397
Alignment:
Q  264 caaaattgttaaccttacactaaaacttctctcttgtgccagtttaaatggagaccatacaaaaaggttccacataattttcctgaagactattgggatt 363  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||| | ||    ||||||||||||||| | |    
T  4391271 caaaattgttagccttacactacaacttctctcttgtgccagtttaaatggagaccttacaagaaggttccatacaaccagcctgaagactattggtaat 4391370  T
Q  364 ggactgcaacaacttaccttacatgtt 390  Q
    |||| |||||||||| ||||| |||||    
T  4391371 ggacagcaacaactttccttatatgtt 4391397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 9044252 - 9044188
Alignment:
Q  183 aatccaatggtcaatgtttaatcctctcacgctctcatttaaaaagtcatctcatttgaaatgcc 247  Q
    |||| |||||||||| ||| |||||||||| |||||||||||||||||||||||||| |||||||    
T  9044252 aatctaatggtcaatatttgatcctctcaccctctcatttaaaaagtcatctcatttaaaatgcc 9044188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 161 - 245
Target Start/End: Complemental strand, 37811257 - 37811173
Alignment:
Q  161 ttttaatctcagccatttaactaatccaatggtcaatgtttaatcctctcacgctctcatttaaaaagtcatctcatttgaaatg 245  Q
    ||||||||  || ||| ||| ||||||| ||| || | ||| |||||||||  ||||||||||||||||||||||||||||||||    
T  37811257 ttttaatcatagacatctaattaatccattggccattattttatcctctcatcctctcatttaaaaagtcatctcatttgaaatg 37811173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 245
Target Start/End: Complemental strand, 36697732 - 36697686
Alignment:
Q  199 tttaatcctctcacgctctcatttaaaaagtcatctcatttgaaatg 245  Q
    |||| ||||||||| ||||||||||||||||| ||||||||||||||    
T  36697732 tttactcctctcaccctctcatttaaaaagtcctctcatttgaaatg 36697686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 16723733 - 16723685
Alignment:
Q  199 tttaatcctctcacgctctcatttaaaaagtcatctcatttgaaatgcc 247  Q
    |||| ||||||||| ||||||||| ||||||| ||||||||||||||||    
T  16723733 tttactcctctcaccctctcattttaaaagtcctctcatttgaaatgcc 16723685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 28540348 - 28540413
Alignment:
Q  182 taatccaatggtcaatgtttaatcctctcacgctctcatttaaaaagtcatctcatttgaaatgcc 247  Q
    ||||||||||| || | ||| || ||||||  ||||||||| ||||||| ||||||||||||||||    
T  28540348 taatccaatggccactatttcatgctctcatcctctcattttaaaagtcctctcatttgaaatgcc 28540413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 24287616 - 24287660
Alignment:
Q  203 atcctctcacgctctcatttaaaaagtcatctcatttgaaatgcc 247  Q
    |||||||||| ||||||||||||||  | ||||||||||||||||    
T  24287616 atcctctcaccctctcatttaaaaaaccctctcatttgaaatgcc 24287660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 264 - 390
Target Start/End: Complemental strand, 37170175 - 37170049
Alignment:
Q  264 caaaattgttaaccttacactaaaacttctctcttgtgccagtttaaatggagaccatacaaaaaggttccacataattttcctgaagactattgggatt 363  Q
    |||||||||||||||||||||| | ||| |||||||||| |||||||||||||||||||||| || |||||||| || || |||||||| |||||||| |    
T  37170175 caaaattgttaaccttacactacatcttatctcttgtgctagtttaaatggagaccatacaagaatgttccacacaacttgcctgaagaatattgggagt 37170076  T
Q  364 ggactgcaacaacttaccttacatgtt 390  Q
    ||||||||||| ||||||||| |||||    
T  37170075 ggactgcaacatcttaccttatatgtt 37170049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 264 - 335
Target Start/End: Original strand, 46487895 - 46487966
Alignment:
Q  264 caaaattgttaaccttacactaaaacttctctcttgtgccagtttaaatggagaccatacaaaaaggttcca 335  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  46487895 caaaattgttaaccttacactacaacttctctcttgtgccagtttaaatggagaccttacaagaaggttcca 46487966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 14254002 - 14253955
Alignment:
Q  196 atgtttaatcctctcacgctctcatttaaaaagtcatctcatttgaaa 243  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||    
T  14254002 atgtttcatcctctcaccctctcatttaaaaagtcatctcatttgaaa 14253955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 243
Target Start/End: Original strand, 14255608 - 14255655
Alignment:
Q  196 atgtttaatcctctcacgctctcatttaaaaagtcatctcatttgaaa 243  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||    
T  14255608 atgtttcatcctctcaccctctcatttaaaaagtcatctcatttgaaa 14255655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 19068512 - 19068467
Alignment:
Q  202 aatcctctcacgctctcatttaaaaagtcatctcatttgaaatgcc 247  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||    
T  19068512 aatcctctcaccctctcatttaaaaagtcctctcatttgaaatgcc 19068467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 19069252 - 19069297
Alignment:
Q  202 aatcctctcacgctctcatttaaaaagtcatctcatttgaaatgcc 247  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||    
T  19069252 aatcctctcaccctctcatttaaaaagtcatctcttttgaaatgcc 19069297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 245
Target Start/End: Original strand, 43448517 - 43448563
Alignment:
Q  199 tttaatcctctcacgctctcatttaaaaagtcatctcatttgaaatg 245  Q
    |||||||||||||| ||||||||||||| ||| ||||||||||||||    
T  43448517 tttaatcctctcaccctctcatttaaaaggtcctctcatttgaaatg 43448563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 345 - 390
Target Start/End: Original strand, 46488009 - 46488054
Alignment:
Q  345 cctgaagactattgggattggactgcaacaacttaccttacatgtt 390  Q
    ||||||||||||||||| ||||| |||||||||||||||| |||||    
T  46488009 cctgaagactattgggaatggacagcaacaacttaccttatatgtt 46488054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 244
Target Start/End: Complemental strand, 29064789 - 29064744
Alignment:
Q  199 tttaatcctctcacgctctcatttaaaaagtcatctcatttgaaat 244  Q
    |||| ||||||||| |||||||||||||| || |||||||||||||    
T  29064789 tttactcctctcaccctctcatttaaaaactcctctcatttgaaat 29064744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 264 - 390
Target Start/End: Complemental strand, 6407759 - 6407633
Alignment:
Q  264 caaaattgttaaccttacactaaaacttctctcttgtgccagtttaaatggagaccatacaaaaaggttccacataattttcctgaagactattgggatt 363  Q
    |||||||||||||||||||||| | ||| |||||||||| |||||||||||||||||||||| || |||||||| || || |||||||| |||||||| |    
T  6407759 caaaattgttaaccttacactacatcttatctcttgtgctagtttaaatggagaccatacaagaatgttccacacaacttgcctgaagaatattgggagt 6407660  T
Q  364 ggactgcaacaacttaccttacatgtt 390  Q
    |||||||||||| |||||||| |||||    
T  6407659 ggactgcaacaagttaccttatatgtt 6407633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 161 - 246
Target Start/End: Complemental strand, 49359727 - 49359642
Alignment:
Q  161 ttttaatctcagccatttaactaatccaatggtcaatgtttaatcctctcacgctctcatttaaaaagtcatctcatttgaaatgc 246  Q
    |||||||| ||||||| ||||||||||||||| || ||||| |||||||||| |||||||||||||| || |||||||||||||||    
T  49359727 ttttaatcacagccatctaactaatccaatggccactgtttcatcctctcaccctctcatttaaaaactcctctcatttgaaatgc 49359642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 161 - 246
Target Start/End: Original strand, 49361937 - 49362022
Alignment:
Q  161 ttttaatctcagccatttaactaatccaatggtcaatgtttaatcctctcacgctctcatttaaaaagtcatctcatttgaaatgc 246  Q
    |||||||| ||||||| |||||||| ||| || || ||||| ||||||||||  ||||||||||||| || |||||||||||||||    
T  49361937 ttttaatcacagccatctaactaattcaacggccactgtttcatcctctcaccttctcatttaaaaactcctctcatttgaaatgc 49362022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 4434015 - 4433929
Alignment:
Q  161 ttttaatctcagccatttaactaatccaatggtcaatgtttaatcctctcacgctctcatttaaaaagtcatctcatttgaaatgcc 247  Q
    |||||||| ||||||| ||| ||||||||||| || ||||| ||||||| |  ||||||||| |||| || ||| ||||||||||||    
T  4434015 ttttaatcacagccatctaattaatccaatggccactgtttcatcctcttatcctctcattttaaaactcctcttatttgaaatgcc 4433929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 25665810 - 25665724
Alignment:
Q  161 ttttaatctcagccatttaactaatccaatggtcaatgtttaatcctctcacgctctcatttaaaaagtcatctcatttgaaatgcc 247  Q
    |||||||| ||||||| ||| ||||||||||| || ||||| ||||||| |  ||||||||| |||| || ||| ||||||||||||    
T  25665810 ttttaatcacagccatctaattaatccaatggccactgtttcatcctcttatcctctcattttaaaactcctcttatttgaaatgcc 25665724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 247
Target Start/End: Original strand, 25670606 - 25670691
Alignment:
Q  162 tttaatctcagccatttaactaatccaatggtcaatgtttaatcctctcacgctctcatttaaaaagtcatctcatttgaaatgcc 247  Q
    ||||||| ||||||| ||| ||||||||||| || ||||| ||||||| |  ||||||||| |||| || ||| ||||||||||||    
T  25670606 tttaatcacagccatctaattaatccaatggccactgtttcatcctcttatcctctcattttaaaactcctcttatttgaaatgcc 25670691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 36391353 - 36391398
Alignment:
Q  199 tttaatcctctcacgctctcatttaaaaagtcatctcatttgaaat 244  Q
    |||||||||||||| |||||||||| |||||| |||||||||||||    
T  36391353 tttaatcctctcaccctctcatttataaagtcctctcatttgaaat 36391398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 2071470 - 2071518
Alignment:
Q  199 tttaatcctctcacgctctcatttaaaaagtcatctcatttgaaatgcc 247  Q
    |||||||||||||| ||||||||| ||||||| ||||| |||| |||||    
T  2071470 tttaatcctctcaccctctcattttaaaagtcctctcacttgatatgcc 2071518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 14237381 - 14237429
Alignment:
Q  199 tttaatcctctcacgctctcatttaaaaagtcatctcatttgaaatgcc 247  Q
    |||| ||||||||| ||||||||||||||||  ||| ||||||||||||    
T  14237381 tttactcctctcaccctctcatttaaaaagtgctcttatttgaaatgcc 14237429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 32994025 - 32994069
Alignment:
Q  203 atcctctcacgctctcatttaaaaagtcatctcatttgaaatgcc 247  Q
    |||||||||| ||||||||||||||  | ||||||||||||||||    
T  32994025 atcctctcaccctctcatttaaaaaaccctctcatttgaaatgcc 32994069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 28242 - 28156
Alignment:
Q  161 ttttaatctcagccatttaactaatccaatggtcaatgtttaatcctctcacgctctcatttaaaaagtcatctcatttgaaatgcc 247  Q
    |||||||| ||||||| ||||||||| ||||| || ||||| |||||||||| ||||||||||||||||| ||| ||||||||||||    
T  28242 ttttaatcacagccatctaactaatctaatggccactgtttcatcctctcaccctctcatttaaaaagtcctcttatttgaaatgcc 28156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1370 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold1370
Description:

Target: scaffold1370; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 247 - 204
Alignment:
Q  204 tcctctcacgctctcatttaaaaagtcatctcatttgaaatgcc 247  Q
    ||||||||  ||||||||||||||||| ||||||||||||||||    
T  247 tcctctcatcctctcatttaaaaagtcctctcatttgaaatgcc 204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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