View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4624-Insertion-4 (Length: 213)
Name: NF4624-Insertion-4
Description: NF4624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4624-Insertion-4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 6 - 213
Target Start/End: Complemental strand, 34419150 - 34418943
Alignment:
| Q |
6 |
cactggcggtgttggcctttgcgccttcgtccttgccaccgagcccattggcccatcaaaacgtggcatggcaggaatgtccaccttctacttcttctcg |
105 |
Q |
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| T |
34419150 |
cactggcggtgttggcctttgcgccttcgtccttgccaccgagcccattggcccatcaaaacgtggcatggcaggaatgtccaccttctacttcttctcg |
34419051 |
T |
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| Q |
106 |
agtggcatagcaattctctctggcattgcctacaccttccaaacatggcgcacactctacattgtttcctccatcccttccatcctatacataatccttg |
205 |
Q |
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| T |
34419050 |
agtggcatagcaattctctctggcattgcctacaccttccaaacatggcgcacactctacattgtttcctccatcccttccatcctatacataatccttg |
34418951 |
T |
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| Q |
206 |
tccttccc |
213 |
Q |
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|||||||| |
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| T |
34418950 |
tccttccc |
34418943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 213
Target Start/End: Complemental strand, 34431392 - 34431192
Alignment:
| Q |
13 |
ggtgttggcctttgcgccttcgtccttgccaccgagcccattggcccatcaaaacgtggcatggcaggaatgtccaccttctacttcttctcgagtggca |
112 |
Q |
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|||||||||||||||||||||||||| || || || || ||||||| ||||||||||||||||||||||||||||| |||||||||||||| | |||| |
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| T |
34431392 |
ggtgttggcctttgcgccttcgtcctcgctactgaacctattggccattcaaaacgtggcatggcaggaatgtccactttctacttcttctccggaggca |
34431293 |
T |
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| Q |
113 |
tagcaattctctctggcattgcctacaccttccaaacatggcgcacactctacattgtttcctccatcccttccatcctatacataatccttgtccttcc |
212 |
Q |
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| T |
34431292 |
ttgcaattctctctggtattgcctacatcttccaaacatggcgtgcactctatatcgccgcctccatcccctccctcctctacataattctcctccttcc |
34431193 |
T |
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| Q |
213 |
c |
213 |
Q |
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| T |
34431192 |
c |
34431192 |
T |
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