View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4624_high_1 (Length: 735)

Name: NF4624_high_1
Description: NF4624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4624_high_1
NF4624_high_1
[»] chr1 (12 HSPs)
chr1 (231-723)||(19456454-19456945)
chr1 (19-158)||(17242012-17242156)
chr1 (19-97)||(9010966-9011044)
chr1 (21-97)||(24302999-24303075)
chr1 (58-158)||(9008762-9008865)
chr1 (110-158)||(9011063-9011110)
chr1 (58-97)||(17240784-17240823)
chr1 (19-73)||(13970040-13970094)
chr1 (109-158)||(24304310-24304358)
chr1 (126-158)||(48030257-48030289)
chr1 (126-156)||(43402266-43402296)
chr1 (110-158)||(17240718-17240767)
[»] chr7 (8 HSPs)
chr7 (19-158)||(5737178-5737322)
chr7 (646-723)||(10197654-10197732)
chr7 (429-487)||(10197896-10197954)
chr7 (58-158)||(5769254-5769359)
chr7 (110-158)||(23525582-23525631)
chr7 (19-97)||(12629337-12629416)
chr7 (112-158)||(6591270-6591316)
chr7 (514-559)||(10197852-10197898)
[»] chr8 (10 HSPs)
chr8 (21-92)||(40463515-40463586)
chr8 (19-97)||(9310831-9310909)
chr8 (650-723)||(25026146-25026220)
chr8 (110-158)||(38973754-38973802)
chr8 (110-158)||(39004852-39004900)
chr8 (126-158)||(14099746-14099778)
chr8 (110-158)||(42480899-42480947)
chr8 (127-158)||(3917797-3917828)
chr8 (19-73)||(38973842-38973897)
chr8 (19-73)||(39004940-39004995)
[»] scaffold0268 (3 HSPs)
scaffold0268 (646-723)||(22356-22434)
scaffold0268 (429-487)||(22135-22193)
scaffold0268 (514-559)||(22191-22237)
[»] scaffold0262 (1 HSPs)
scaffold0262 (21-92)||(4293-4364)
[»] chr3 (8 HSPs)
chr3 (21-92)||(11150344-11150415)
chr3 (110-162)||(42277228-42277280)
chr3 (37-97)||(51832437-51832497)
chr3 (19-72)||(52043333-52043386)
chr3 (19-73)||(39605670-39605725)
chr3 (110-160)||(39605582-39605631)
chr3 (19-73)||(54672720-54672774)
chr3 (110-158)||(15438471-15438520)
[»] chr4 (6 HSPs)
chr4 (21-97)||(47862000-47862076)
chr4 (110-160)||(56083353-56083403)
chr4 (58-97)||(44355359-44355398)
chr4 (19-73)||(47378639-47378693)
chr4 (126-156)||(47861936-47861966)
chr4 (19-72)||(52706704-52706757)
[»] scaffold0049 (1 HSPs)
scaffold0049 (126-158)||(3943-3975)
[»] scaffold0484 (1 HSPs)
scaffold0484 (127-158)||(11537-11568)
[»] chr6 (2 HSPs)
chr6 (127-158)||(12603938-12603969)
chr6 (127-158)||(25483421-25483452)
[»] chr5 (1 HSPs)
chr5 (127-158)||(29875948-29875979)
[»] chr2 (1 HSPs)
chr2 (111-158)||(29042337-29042384)
[»] scaffold0071 (1 HSPs)
scaffold0071 (110-158)||(23671-23720)


Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 231 - 723
Target Start/End: Original strand, 19456454 - 19456945
Alignment:
Q  231 actcattccaatttcaaaagtcaattaaacactaccacgtcacaaattttaccaccgatcaaaaaacccaaaattttcaaacttattccaaaaatcccaa 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  19456454 actcattccaatttcaaaagtcaattaaacactaccacgtcacaaattttaccaccgatcaaaaaaccccaaattttcaaactaat-ccaaaaatcccaa 19456552  T
Q  331 cgcaccatttcatccttatccctgatttttccctcctcaaaaccccaaaataccgttttccccacatttttctctccccaaactaccctccaccagataa 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19456553 cgcaccatttcatccttatccctgatttttccctcctcaaaaccccaaaataccgttttccccacatttttctctccccaaactaccctccaccagataa 19456652  T
Q  431 atcttctcatgaaagcttccccaaattcatttcaaaattcacccccgtagtttccaatttccttcttctcccgcacactttttcaaatccaaaa-caccc 529  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||| | |||    
T  19456653 atcttctcatgaaagcttccccaaattcatttcaaaattcacccgcgtagtttccaatttccttcttctcccgcacgcttttccaaatccaaaacccccc 19456752  T
Q  530 caaaattttcaaattcacccgctcctatttccactcagaaatcattatttaaacccttcaccccttcattcttactcacaacacttcaacctatcagaat 629  Q
    |||||||| ||||||| |||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  19456753 caaaatttacaaattctcccgctcctatttccactaaaaaatcattatttaaacccttcacctcttcattcttactcacaacacttcaacctatcaaaat 19456852  T
Q  630 aatcacnnnnnnnctttcaatttcaatttcccaaaccaaacatgcctgcttttccagaagaaccccttcttgccccaaacccagaccgattctg 723  Q
    ||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19456853 aatcac-ttttttctttcaatttcaatttcccaaaccaaacatgcctgcttttccagaagaaccccttcttgccccaaacccagaccgattctg 19456945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 17242012 - 17242156
Alignment:
Q  19 acatcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatctacaag-nnnnnnnngaca---gggta 114  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||         ||||   |||||    
T  17242012 acatcatcacattaatctagtcagatggtttgggggtgtaaaccaaagaatcttctaatggcaagggggaatctacaagtttttttttgacaggggggta 17242111  T
Q  115 taccaaaaagtccccaaatggca-gggggtaaaagcctattaacc 158  Q
    |||||||||| |||||||||||| |||||||||||||||||||||    
T  17242112 taccaaaaagcccccaaatggcaggggggtaaaagcctattaacc 17242156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 9010966 - 9011044
Alignment:
Q  19 acatcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatctacaag 97  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  9010966 acatcatcacattaatccagtcagatggtttgggggtgtaaaccaaagaatcttctaatggcaaggggaaatctacaag 9011044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 24303075 - 24302999
Alignment:
Q  21 atcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatctacaag 97  Q
    ||||||||||||||| | |||||||||||| ||||||||| |||||||||||||||| | |||||||||||| ||||    
T  24303075 atcatcacattaatccattcagatggcttgagggtgtaaatcaaagaatcttctaattgcaagggggaatctccaag 24302999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 9008865 - 9008762
Alignment:
Q  58 aaaccaaagaatcttctaatggtaagggggaatctacaagnnnnnnnn-gacaggg--tataccaaaaagtccccaaatggcagggggtaaaagcctatt 154  Q
    |||||||||||||||||||||| |||||||||||||||||         |||||||  ||||||||||   |||||||||||||||||||||||||||||    
T  9008865 aaaccaaagaatcttctaatggcaagggggaatctacaagtttttttttgacagggggtataccaaaagacccccaaatggcagggggtaaaagcctatt 9008766  T
Q  155 aacc 158  Q
    ||||    
T  9008765 aacc 9008762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 9011063 - 9011110
Alignment:
Q  110 gggtataccaaaaagtccccaaatggcagggggtaaaagcctattaacc 158  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  9011063 gggtataccaaaaag-ccccaaatggcagggggtaaaaacctattaacc 9011110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 58 - 97
Target Start/End: Complemental strand, 17240823 - 17240784
Alignment:
Q  58 aaaccaaagaatcttctaatggtaagggggaatctacaag 97  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  17240823 aaaccaaagaatcttctaatggcaagggggaatctacaag 17240784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 13970094 - 13970040
Alignment:
Q  19 acatcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttc 73  Q
    |||||||| |||||||| ||||| |||| |||||||| |||||||||||||||||    
T  13970094 acatcatctcattaatccagtcatatggtttgggggtataaaccaaagaatcttc 13970040  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 24304310 - 24304358
Alignment:
Q  109 agggtataccaaaaagtccccaaatggcagggggtaaaagcctattaacc 158  Q
    |||||| |||||||| ||||||||||||||||||||||| ||||||||||    
T  24304310 agggtaaaccaaaaa-tccccaaatggcagggggtaaaaacctattaacc 24304358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 48030257 - 48030289
Alignment:
Q  126 ccccaaatggcagggggtaaaagcctattaacc 158  Q
    |||||||||||||||||||||||||||||||||    
T  48030257 ccccaaatggcagggggtaaaagcctattaacc 48030289  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 156
Target Start/End: Complemental strand, 43402296 - 43402266
Alignment:
Q  126 ccccaaatggcagggggtaaaagcctattaa 156  Q
    |||||||||||||||||||||||||||||||    
T  43402296 ccccaaatggcagggggtaaaagcctattaa 43402266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 17240767 - 17240718
Alignment:
Q  110 gggtataccaaaaagtccccaaatggcaggggg-taaaagcctattaacc 158  Q
    |||||||||||||   ||||||||||||||||| ||||||||||||||||    
T  17240767 gggtataccaaaagacccccaaatggcaggggggtaaaagcctattaacc 17240718  T

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Target: chr7 (Bit Score: 79; Significance: 2e-36; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 5737322 - 5737178
Alignment:
Q  19 acatcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatctacaag-nnnnnnnngaca---gggta 114  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||         ||||   |||||    
T  5737322 acatcatcacattaatctagtcagatggtttgggggtgtaaaccaaagaatcttctaatggcaagggggaatctacaagtttttttttgacaggggggta 5737223  T
Q  115 taccaaaaagtccccaaatggca-gggggtaaaagcctattaacc 158  Q
    |||||||||| |||||||||||| |||||||||||||||||||||    
T  5737222 taccaaaaagcccccaaatggcaggggggtaaaagcctattaacc 5737178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 646 - 723
Target Start/End: Complemental strand, 10197732 - 10197654
Alignment:
Q  646 tcaatttcaatttcccaaa-ccaaacatgcctgcttttccagaagaaccccttcttgccccaaacccagaccgattctg 723  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||    
T  10197732 tcaatttcaatttcctaaaaccaaacatgcctgcttttccagaagaaccacttctcgcaccaaacccagaccgattctg 10197654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 429 - 487
Target Start/End: Complemental strand, 10197954 - 10197896
Alignment:
Q  429 aaatcttctcatgaaagcttccccaaattcatttcaaaattcacccccgtagtttccaa 487  Q
    |||||||||||| ||||||||||||| ||| ||||||||||||||| |||| |||||||    
T  10197954 aaatcttctcatcaaagcttccccaatttcctttcaaaattcacccgcgtactttccaa 10197896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 5769254 - 5769359
Alignment:
Q  58 aaaccaaagaatcttctaatggtaagggggaatctacaagnnnnnnnn-gacaggg---tataccaaaaagtccccaaatggca-gggggtaaaagccta 152  Q
    |||||||||||||||||||||| |||||||||||||||||         |||||||   ||||||||||   |||||||||||| |||||||||||||||    
T  5769254 aaaccaaagaatcttctaatggcaagggggaatctacaagtttttttttgacaggggggtataccaaaagacccccaaatggcaggggggtaaaagccta 5769353  T
Q  153 ttaacc 158  Q
    ||||||    
T  5769354 ttaacc 5769359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 23525631 - 23525582
Alignment:
Q  110 gggtataccaaaaagtccccaaatggcag-ggggtaaaagcctattaacc 158  Q
    ||||||||||||||  ||||||||||||| ||||||||||||||||||||    
T  23525631 gggtataccaaaaatcccccaaatggcagcggggtaaaagcctattaacc 23525582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 12629337 - 12629416
Alignment:
Q  19 acatcatcacattaatctagtcagatggct-tgggggtgtaaaccaaagaatcttctaatggtaagggggaatctacaag 97  Q
    |||||||| |||| ||| |||||||||||  | |||| ||||||||||||||||  |||||| |||||||||||| ||||    
T  12629337 acatcatcccatttatccagtcagatggcgctaggggggtaaaccaaagaatctaataatggcaagggggaatcttcaag 12629416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 6591316 - 6591270
Alignment:
Q  112 gtataccaaaaagtccccaaatggcagggggtaaaagcctattaacc 158  Q
    |||||||||||   | |||||||||||||||||||||||||||||||    
T  6591316 gtataccaaaataccaccaaatggcagggggtaaaagcctattaacc 6591270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 514 - 559
Target Start/End: Complemental strand, 10197898 - 10197852
Alignment:
Q  514 caaatccaaaacaccccaaaat-tttcaaattcacccgctcctattt 559  Q
    |||||||||||| ||||||||  ||||||||||||||||||||||||    
T  10197898 caaatccaaaaccccccaaaaaatttcaaattcacccgctcctattt 10197852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 8e-23; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 40463515 - 40463586
Alignment:
Q  21 atcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatct 92  Q
    ||||||| ||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  40463515 atcatcatattaatccaatcagatggcttgggggtgtaaatcaaagaatcttctaatggtaagggggaatct 40463586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 9310831 - 9310909
Alignment:
Q  19 acatcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatctacaag 97  Q
    |||||||| |||||||| | ||| || |||||||||||| ||||| |||||||||| |||| |||||||||||| ||||    
T  9310831 acatcatctcattaatccattcatatagcttgggggtgtgaaccagagaatcttctcatggcaagggggaatctccaag 9310909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 650 - 723
Target Start/End: Complemental strand, 25026220 - 25026146
Alignment:
Q  650 tttcaatttcccaaaccaaaca-tgcctgcttttccagaagaaccccttcttgccccaaacccagaccgattctg 723  Q
    |||||||| || |||||||||| ||||| |||| ||||||||||| ||||| || ||||||||||||||||||||    
T  25026220 tttcaattcccaaaaccaaacaatgccttctttcccagaagaacctcttctcgctccaaacccagaccgattctg 25026146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 38973802 - 38973754
Alignment:
Q  110 gggtataccaaaaagtccccaaatggcagggggtaaaagcctattaacc 158  Q
    ||||||||||||||  |||||||||||||||||||||| ||||||||||    
T  38973802 gggtataccaaaaaacccccaaatggcagggggtaaaaacctattaacc 38973754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 39004900 - 39004852
Alignment:
Q  110 gggtataccaaaaagtccccaaatggcagggggtaaaagcctattaacc 158  Q
    ||||||||||||||  |||||||||||||||||||||| ||||||||||    
T  39004900 gggtataccaaaaaacccccaaatggcagggggtaaaaacctattaacc 39004852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 14099778 - 14099746
Alignment:
Q  126 ccccaaatggcagggggtaaaagcctattaacc 158  Q
    |||||||||||||||||||||||||||||||||    
T  14099778 ccccaaatggcagggggtaaaagcctattaacc 14099746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 42480947 - 42480899
Alignment:
Q  110 gggtataccaaaaagtccccaaatggcagggggtaaaagcctattaacc 158  Q
    ||||| ||||||||  ||| |||||||||||||||||||||||||||||    
T  42480947 gggtaaaccaaaaaacccctaaatggcagggggtaaaagcctattaacc 42480899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 158
Target Start/End: Complemental strand, 3917828 - 3917797
Alignment:
Q  127 cccaaatggcagggggtaaaagcctattaacc 158  Q
    ||||||||||||||||||||||||||||||||    
T  3917828 cccaaatggcagggggtaaaagcctattaacc 3917797  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 38973897 - 38973842
Alignment:
Q  19 acatcatcacattaatctagtcagatggcttggggg-tgtaaaccaaagaatcttc 73  Q
    ||||||||  ||||||||||||| |||| ||||||| |||||||||||||||||||    
T  38973897 acatcatcctattaatctagtcatatggtttggggggtgtaaaccaaagaatcttc 38973842  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 39004995 - 39004940
Alignment:
Q  19 acatcatcacattaatctagtcagatggcttggggg-tgtaaaccaaagaatcttc 73  Q
    ||||||||  ||||||||||||| |||| ||||||| |||||||||||||||||||    
T  39004995 acatcatcctattaatctagtcatatggtttggggggtgtaaaccaaagaatcttc 39004940  T

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Target: scaffold0268 (Bit Score: 55; Significance: 3e-22; HSPs: 3)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 646 - 723
Target Start/End: Original strand, 22356 - 22434
Alignment:
Q  646 tcaatttcaatttcccaaa-ccaaacatgcctgcttttccagaagaaccccttcttgccccaaacccagaccgattctg 723  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||    
T  22356 tcaatttcaatttcctaaaaccaaacatgcctgcttttccagaagaaccacttctcgcaccaaacccagaccgattctg 22434  T

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Target: scaffold0268; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 429 - 487
Target Start/End: Original strand, 22135 - 22193
Alignment:
Q  429 aaatcttctcatgaaagcttccccaaattcatttcaaaattcacccccgtagtttccaa 487  Q
    |||||||||||| ||||||||||||| ||| ||||||||||||||| |||| |||||||    
T  22135 aaatcttctcatcaaagcttccccaatttcctttcaaaattcacccgcgtactttccaa 22193  T

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Target: scaffold0268; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 514 - 559
Target Start/End: Original strand, 22191 - 22237
Alignment:
Q  514 caaatccaaaacaccccaaaat-tttcaaattcacccgctcctattt 559  Q
    |||||||||||| ||||||||  ||||||||||||||||||||||||    
T  22191 caaatccaaaaccccccaaaaaatttcaaattcacccgctcctattt 22237  T

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Target: scaffold0262 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 4293 - 4364
Alignment:
Q  21 atcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatct 92  Q
    ||||||| ||||||| | ||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||    
T  4293 atcatcatattaatccaatcagatggcttgggggtgtaaaccaaataatcttctaatggcaagagggaatct 4364  T

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Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 11150415 - 11150344
Alignment:
Q  21 atcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatct 92  Q
    ||||||||||||||| | ||||||| |||||||||||||||||| |||||||||||||| ||||||| ||||    
T  11150415 atcatcacattaatccaatcagatgacttgggggtgtaaaccaaggaatcttctaatggcaaggggggatct 11150344  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 42277280 - 42277228
Alignment:
Q  110 gggtataccaaaaagtccccaaatggcagggggtaaaagcctattaaccataa 162  Q
    ||||||||||||||   ||||||||||||||||||||||||||||||||||||    
T  42277280 gggtataccaaaaaaaacccaaatggcagggggtaaaagcctattaaccataa 42277228  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 51832437 - 51832497
Alignment:
Q  37 agtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatctacaag 97  Q
    ||||| ||||||||||||||| ||| ||||||||||||||||  ||||| |||||||||||    
T  51832437 agtcatatggcttgggggtgttaactaaagaatcttctaatgacaagggagaatctacaag 51832497  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 52043333 - 52043386
Alignment:
Q  19 acatcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatctt 72  Q
    |||||||| |||| ||| ||||||||| ||||||||||||||||||| ||||||    
T  52043333 acatcatctcattgatccagtcagatgacttgggggtgtaaaccaaataatctt 52043386  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 39605725 - 39605670
Alignment:
Q  19 acatcatcacattaatctagtcagatggcttggggg-tgtaaaccaaagaatcttc 73  Q
    |||||||| |||||||| ||||| |||| ||||||| |||||||||||||||||||    
T  39605725 acatcatcccattaatccagtcatatggtttggggggtgtaaaccaaagaatcttc 39605670  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 160
Target Start/End: Complemental strand, 39605631 - 39605582
Alignment:
Q  110 gggtataccaaaaagtccccaaatggcagggggtaaaagcctattaaccat 160  Q
    ||||| ||||||||  |||||||||||||||| ||||||||||||||||||    
T  39605631 gggtacaccaaaaaacccccaaatggcagggg-taaaagcctattaaccat 39605582  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 54672774 - 54672720
Alignment:
Q  19 acatcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttc 73  Q
    |||||||| |||||||| ||||| |||| ||| ||||||||| ||||||||||||    
T  54672774 acatcatcccattaatccagtcatatggtttgagggtgtaaatcaaagaatcttc 54672720  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 15438520 - 15438471
Alignment:
Q  110 gggtataccaaaaagtccccaaatggcaggggg-taaaagcctattaacc 158  Q
    ||||||||||||||  || |||||||||||||| ||||||||||||||||    
T  15438520 gggtataccaaaaaaccctcaaatggcaggggggtaaaagcctattaacc 15438471  T

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Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 47862076 - 47862000
Alignment:
Q  21 atcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatctacaag 97  Q
    |||| |||||||||| | |||||||| |||| ||||||||||||||||||||||||||| ||||||| |||| ||||    
T  47862076 atcaccacattaatccaatcagatggtttggaggtgtaaaccaaagaatcttctaatggcaaggggggatctccaag 47862000  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 160
Target Start/End: Complemental strand, 56083403 - 56083353
Alignment:
Q  110 gggtataccaaaaagtccccaaatggcagggggtaaaagcctattaaccat 160  Q
    |||||||||||||   |||||||||||||||||||||||||||||||||||    
T  56083403 gggtataccaaaagacccccaaatggcagggggtaaaagcctattaaccat 56083353  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 97
Target Start/End: Original strand, 44355359 - 44355398
Alignment:
Q  58 aaaccaaagaatcttctaatggtaagggggaatctacaag 97  Q
    |||||||||||||||||||| | |||||||||||||||||    
T  44355359 aaaccaaagaatcttctaatagcaagggggaatctacaag 44355398  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 47378639 - 47378693
Alignment:
Q  19 acatcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttc 73  Q
    |||||||| |||||||| ||||| || |||||||||| | |||||||||||||||    
T  47378639 acatcatctcattaatccagtcatatagcttgggggtatgaaccaaagaatcttc 47378693  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 156
Target Start/End: Complemental strand, 47861966 - 47861936
Alignment:
Q  126 ccccaaatggcagggggtaaaagcctattaa 156  Q
    |||||||||||||||||||||||||||||||    
T  47861966 ccccaaatggcagggggtaaaagcctattaa 47861936  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 52706704 - 52706757
Alignment:
Q  19 acatcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatctt 72  Q
    |||||||  |||| ||| ||||||||||||||| ||||||||||||| ||||||    
T  52706704 acatcatttcattgatccagtcagatggcttggaggtgtaaaccaaataatctt 52706757  T

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Target: scaffold0049 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 3943 - 3975
Alignment:
Q  126 ccccaaatggcagggggtaaaagcctattaacc 158  Q
    |||||||||||||||||||||||||||||||||    
T  3943 ccccaaatggcagggggtaaaagcctattaacc 3975  T

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Target: scaffold0484 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 158
Target Start/End: Complemental strand, 11568 - 11537
Alignment:
Q  127 cccaaatggcagggggtaaaagcctattaacc 158  Q
    ||||||||||||||||||||||||||||||||    
T  11568 cccaaatggcagggggtaaaagcctattaacc 11537  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 158
Target Start/End: Complemental strand, 12603969 - 12603938
Alignment:
Q  127 cccaaatggcagggggtaaaagcctattaacc 158  Q
    ||||||||||||||||||||||||||||||||    
T  12603969 cccaaatggcagggggtaaaagcctattaacc 12603938  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 158
Target Start/End: Original strand, 25483421 - 25483452
Alignment:
Q  127 cccaaatggcagggggtaaaagcctattaacc 158  Q
    ||||||||||||||||||||||||||||||||    
T  25483421 cccaaatggcagggggtaaaagcctattaacc 25483452  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 158
Target Start/End: Complemental strand, 29875979 - 29875948
Alignment:
Q  127 cccaaatggcagggggtaaaagcctattaacc 158  Q
    ||||||||||||||||||||||||||||||||    
T  29875979 cccaaatggcagggggtaaaagcctattaacc 29875948  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 29042384 - 29042337
Alignment:
Q  111 ggtataccaaaaagtccccaaatggcagggggtaaaagcctattaacc 158  Q
    ||||||||||||   |||||||| ||||||||||||||||||||||||    
T  29042384 ggtataccaaaagacccccaaatagcagggggtaaaagcctattaacc 29042337  T

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Target: scaffold0071 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 23671 - 23720
Alignment:
Q  110 gggtataccaaaaagtccccaaatggca-gggggtaaaagcctattaacc 158  Q
    ||||||||||||||  || ||||||||| |||||||||||||||||||||    
T  23671 gggtataccaaaaaaccctcaaatggcaggggggtaaaagcctattaacc 23720  T

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