View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4624_high_3 (Length: 351)
Name: NF4624_high_3
Description: NF4624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4624_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 32425488 - 32425145
Alignment:
| Q |
1 |
tggagagtctagcttcttctgcggttaaaatggcgaactcagctaaagcagcacttatattggttttaactagaggagggagtactgcaaaattagtggc |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32425488 |
tggagagtctagcttcttctgcggttaaaatggcaaactcagctaaagcagcacttatattggttttaactagaggagggagtactgcaaaattagtggc |
32425389 |
T |
|
| Q |
101 |
taaatatagggcaggcatgccaattctttctgttgtcgttcctgagattaagaccgatacctttgattggtcctgcagtgatgaggtccctgccagacat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32425388 |
taaatatagggcaggcatgccaattctttctgttgtcgttcctgagattaagaccgatacctttgattggtcctgcagtgatgaggtccctgccagacat |
32425289 |
T |
|
| Q |
201 |
agcttgatattccgaggattgattccagtactgagtgcgggttctgctagagcttctcatgcagaaacaactgaagaggcactagacttcgccattcagt |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32425288 |
agcttgatattccgaggattgattccagtactgagtgcgggttctgctagagcttctcatgcagaaacaacagaagaggcactagacttcgccattcagt |
32425189 |
T |
|
| Q |
301 |
atgccaaaacaaaaggtctttgcaataacggggattctgtggtg |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32425188 |
atgccaaaacaaaaggtctttgcaataacggggattctgtggtg |
32425145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 32419210 - 32418904
Alignment:
| Q |
1 |
tggagagtctagcttcttctgcggttaaaatggcgaactcagctaaagcagcacttatattggttttaactagaggagggagtactgcaaaattagtggc |
100 |
Q |
| |
|
|||||||||||||||||||||| |||| || || ||||| |||| |||||| || ||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
32419210 |
tggagagtctagcttcttctgctgttagaacagccaactctgctagagcagctctcatattggttttaactagaggagggactactgcaaaattggtggc |
32419111 |
T |
|
| Q |
101 |
taaatatagggcaggcatgccaattctttctgttgtcgttcctgagattaagaccgatacctttgattggtcctgcagtgatgaggtccctgccagacat |
200 |
Q |
| |
|
|||||| ||| |||||| |||||||||||||||||| ||||||||| | | ||| ||||||||||||||||| |||||||||||| |||||| |||||| |
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| T |
32419110 |
taaatacaggccaggcacgccaattctttctgttgttgttcctgagctaacgactgatacctttgattggtcatgcagtgatgagtcccctgcgagacat |
32419011 |
T |
|
| Q |
201 |
agcttgatattccgaggattgattccagtactgagtgcgggttctgctagagcttctcatgcagaaacaactgaagaggcactagacttcgccattcagt |
300 |
Q |
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|
||||||||||||||||||||||||||| || | ||||| | |||||||||||||||||||||||||||||| ||||| ||| |||| || ||| |||| | |
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| T |
32419010 |
agcttgatattccgaggattgattccaatattaagtgcagcttctgctagagcttctcatgcagaaacaacagaagatgcaatagaatttgcccttcaat |
32418911 |
T |
|
| Q |
301 |
atgccaa |
307 |
Q |
| |
|
|||||| |
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|
| T |
32418910 |
gtgccaa |
32418904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 40596194 - 40595851
Alignment:
| Q |
1 |
tggagagtctagcttcttctgcggttaaaatggcgaactcagctaaagcagcacttatattggttttaactagaggagggagtactgcaaaattagtggc |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40596194 |
tggagagtctagcttcttctgcagttaaaatggccaactcagctaaagcagcacttatattggttttaactagaggagggagtactgcaaaattagtggc |
40596095 |
T |
|
| Q |
101 |
taaatatagggcaggcatgccaattctttctgttgtcgttcctgagattaagaccgatacctttgattggtcctgcagtgatgaggtccctgccagacat |
200 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
40596094 |
taaatacagggctggcatgccaattctttctgttgtcgttcctgagattaagactgacacttttgattggtcctgcagtgatgaggcccctgccagacat |
40595995 |
T |
|
| Q |
201 |
agcttgatattccgaggattgattccagtactgagtgcgggttctgctagagcttctcatgcagaaacaactgaagaggcactagacttcgccattcagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || || |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
40595994 |
agcttgatattccgaggattgattccagtactcagcgcaggttctgctagagcttctcacacagaaacaacagaagaggcactagacttcgccattcagt |
40595895 |
T |
|
| Q |
301 |
atgccaaaacaaaaggtctttgcaataacggggattctgtggtg |
344 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||| |
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|
| T |
40595894 |
atgccaaaacaaagggtctctgcaataacggggattctgtggtg |
40595851 |
T |
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