View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4624_high_4 (Length: 344)
Name: NF4624_high_4
Description: NF4624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4624_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 41091667 - 41091333
Alignment:
| Q |
1 |
atatgtttgttctagtttcctcaaacttgttcacaatcatatcatatcaactccaaacatcaactagctgacccattgaaaaaagcactacctaaaatcc |
100 |
Q |
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| T |
41091667 |
atatgtttgttctagtttcctcaaacttgttcacaatcatatcataacaactccaaacatcaactagctgacccattgaaaaaagcactacctaaaatcc |
41091568 |
T |
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| Q |
101 |
ctattctgcatctcatttccaagttggggatttcaaacatatatcttccaacttgagagggggatattgaatataacaaatttgttgcatttatgttatt |
200 |
Q |
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| T |
41091567 |
ctattctgcatctcatttccaagttggggatttcaaacatatatcttccaacttgagagggggatattgaatataacaaatttgttgcatttatgttatc |
41091468 |
T |
|
| Q |
201 |
actgtttcatagttagtttaattgaggttctccttgttacatgagatatacttcaatacgaagaaaactctattttaactttatttcatggctctatctc |
300 |
Q |
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| T |
41091467 |
actgttttatagttagtttaattgaggttctccttgttacatgagatatacttcaatacgaagaaaactctattttaactttatttcatggctctatctc |
41091368 |
T |
|
| Q |
301 |
tctacctatgaaacacaggtacggatacaaacacca |
336 |
Q |
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| T |
41091367 |
tctacctatgaaacacagttac-gatacaaacacca |
41091333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 41101769 - 41101475
Alignment:
| Q |
1 |
atatgtttgttctagtttcctcaaacttgttcacaatcatatcatatcaactccaaacatcaactagctgacccattgaaaaaagcactacctaaaatcc |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
41101769 |
atatgtttgttcttgtttcctcaaacttgttcacaatcatatcatatcagctccaaacatcaactagcttacccattgaaaaaagcactacc-aaaatcc |
41101671 |
T |
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| Q |
101 |
ctattctgcatctcatttccaagttggggatttcaaacat-atatcttccaacttgagagggggatattgaatataacaaatttgttgcatttatgttat |
199 |
Q |
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| T |
41101670 |
cttttcagcatctcatttccaagttggagatattgaacattataccttccaacttgagaggaggatattgaatataacaaatttcttgcatttatgttat |
41101571 |
T |
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| Q |
200 |
tactgtttcatagttagtttaattgaggttctccttgttacatgagatatacttcaatacgaagaaaactctattttaactttatttcatggctct |
295 |
Q |
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|||||||| |||||| |||||||| |||||| ||||||| ||||||||||||||||||||||||||||||| |||| |||||| ||||||||||| |
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| T |
41101570 |
tactgttttatagttggtttaatttaggttcaccttgttgcatgagatatacttcaatacgaagaaaactcgatttcaacttttattcatggctct |
41101475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 41080312 - 41080094
Alignment:
| Q |
1 |
atatgtttgttctagtttcctcaaacttgttcacaatcatatcatatcaactccaaacatcaactagctgacccattgaaaaaagcactacctaaaatcc |
100 |
Q |
| |
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||||||||||||||||||||||||| |||||| |||||| |||| | ||||| |||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
41080312 |
atatgtttgttctagtttcctcaaatttgttcgcaatca---cata--agctccagacatgaactagctgacccattgacaaaagcactacctaaaatcc |
41080218 |
T |
|
| Q |
101 |
ctattctgcatctcatttccaagttggggatttcaaacatatatcttccaacttgagagggggatattgaatataacaaatttgttgcatttatgttatt |
200 |
Q |
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|| ||| ||||||||||||| |||||||||| | ||||||||||||||||||| ||| ||||||||| ||||||||| |||||||||||||||||| | |
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| T |
41080217 |
cttttcagcatctcatttcctagttggggatattgaacatatatcttccaacttaaga-ggggatatttaatataacatatttgttgcatttatgttcta |
41080119 |
T |
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| Q |
201 |
actgttt--catagttagtttaatt |
223 |
Q |
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||||||| ||||||||||||||| |
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| T |
41080118 |
actgttttatatagttagtttaatt |
41080094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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