View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4624_high_6 (Length: 320)
Name: NF4624_high_6
Description: NF4624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4624_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 239905 - 240096
Alignment:
| Q |
1 |
aaatagagtagtactagtattagtaactaacaagagcttcctcaatagaagaacgttgatgaggagttgttaagagtcctctttgtgtgtcttggacaga |
100 |
Q |
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| T |
239905 |
aaatagagtagtactagtattagtaactaacaagagcttcctcaatagaagaacgttgatgaggagttgttaagagtcctctttgtgtgtcttggacaga |
240004 |
T |
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| Q |
101 |
tgttaaaagttcatgcttattgttttctagttcagaatcatatgccttcaaaatcaaatg----aatgaattaattaaaagtgattaaccca |
188 |
Q |
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| T |
240005 |
tgttaaaagctcatgcttattgttttctagttcagaatcatatgccttcaaaatcaaatgaattaattaattaattaaaagtgattaaccca |
240096 |
T |
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Target: chr4; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 219 - 311
Target Start/End: Original strand, 240111 - 240203
Alignment:
| Q |
219 |
aattagaatggaaaccttacctgagtaacagaagatgccatagccatggaaatggattttgatttcctcctattaacattgttgagtctgtgg |
311 |
Q |
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| T |
240111 |
aattagaatggaaaccttacctgagtaacagaagatgccatagccatggaaatggattttgatttcctcctattaacattgttgagtgtgtgg |
240203 |
T |
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