View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4624_low_1 (Length: 434)
Name: NF4624_low_1
Description: NF4624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4624_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 15 - 344
Target Start/End: Original strand, 22073881 - 22074211
Alignment:
| Q |
15 |
ttaatgactttgagttttggtttgactttagaagttcgtgtgttaatatcagtagacacacatactttcttgccttctaacactaatttccttctctct- |
113 |
Q |
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| T |
22073881 |
ttaatgactttgagttttggtttgactttagaaattggtgtgttaatgttagtagacacacatactttcttgccttctaacactaatttccttctctttc |
22073980 |
T |
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| Q |
114 |
ttgaagttgactgttgttcttgttgcctaagttgaagaggatccatgacatatgttagttttagaacttgtatttagttaataaaagtgatgagagagnn |
213 |
Q |
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| T |
22073981 |
ttgaagttgactgttgttctttttgcctaagttgaagaggatccatgacataggttagttttagaacttgtatttagttaataaaagtgatgagagagtt |
22074080 |
T |
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| Q |
214 |
nnnnnnatgttgttctataaatgaagttaaccacgcttttggaagtgaaaaagatatagtttgacattttcccatgcatggtctcaattgtactctgcta |
313 |
Q |
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| T |
22074081 |
ttttttatgtttttctataaatgaagttaaccacgcttttggaaggggaaaagatatagtttgacatttttccatgcatggtctcaattgtactctgcta |
22074180 |
T |
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| Q |
314 |
tcttattgaaaagagtaatagaaggaaagga |
344 |
Q |
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| T |
22074181 |
tcttattgaaaagagtaatagaaggaaagga |
22074211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 339 - 426
Target Start/End: Original strand, 22076346 - 22076433
Alignment:
| Q |
339 |
aaaggacagttagcttttggtagagtggctaatgtaggagaaagtgggatttgacattactgttgaagcaggtaaattgatgatgatg |
426 |
Q |
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| T |
22076346 |
aaaggaccgttaatttttggtagaggggctaatgtaggagaaagtggaatttgacattactgttcaagcaggtaaattgatgatgatg |
22076433 |
T |
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