View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4625_high_4 (Length: 248)
Name: NF4625_high_4
Description: NF4625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4625_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 45280189 - 45280417
Alignment:
| Q |
1 |
tcatattcaagattccaagaacataagactctgctacttctattatcaaatcttatattcttagtattttagaagtcatttatccaaaatagacataact |
100 |
Q |
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| T |
45280189 |
tcatattcaagattccaagaacataagactctgctacttctattatcaaatcttatattcttagtattttagaagccatttatccaaaatagacataact |
45280288 |
T |
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| Q |
101 |
cagaaacaatnnnnnnntttaagagttaaatatggtcttgaacaaatgaaaaagaaataagagactcacagataagtcgttggttatgtgggaaatctct |
200 |
Q |
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| T |
45280289 |
ca--aacaataaaaaa-tttaagatttaaatatggtcttgaacaaatgaaaaagaagtaagaggctcacagataagtcgttggttatgtgggaaatctct |
45280385 |
T |
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| Q |
201 |
tccttggctttcttggagatccaaaagcttcc |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
45280386 |
tccttggctttcttggagatccaaaagcttcc |
45280417 |
T |
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