View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4625_low_2 (Length: 351)
Name: NF4625_low_2
Description: NF4625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4625_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 3685649 - 3685306
Alignment:
| Q |
1 |
tttctgctaatgccaatgctgcttcttttgacattataacttcctctaccatacgttcctcctccattttccattgagtaatctcattagcctgtcaata |
100 |
Q |
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| T |
3685649 |
tttctgctaatgccaatgctgcttcttttgacattataacttcctctaccatacgttcctcctccattttccattgagtaatctcattagcctgtcaata |
3685550 |
T |
|
| Q |
101 |
attgaaaccttttaatctcatttttcatattacatagcacttttcattgccttttt-atcttttctaagtttgtgtatgaaattaatcactactagaaaa |
199 |
Q |
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| T |
3685549 |
attgaaaccttttaatctcatttttcatattacatagcacttttcattgccttttttatcttttctaagtttgtgtatgaaattaatcactactagaaaa |
3685450 |
T |
|
| Q |
200 |
agtttgtgtaagaccaaccacatgttagtaagtgatagtgtaatttacatcaccttattttgggctgaaattgcttctttgcaagctgatttgtacatgg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3685449 |
agtttgtgtaagaccaaccacatgttagtaagtgatagtgtaatttacatcaccttattttgggctgaaattgcttctttgcaagctgatttgtacatgg |
3685350 |
T |
|
| Q |
300 |
tcattgtttgcctaagtttgagtctcaattctttcatctctgct |
343 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3685349 |
tcattgtttgcctaagtttgagtctcaattctttcatctctgct |
3685306 |
T |
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