View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4626-Insertion-1 (Length: 928)
Name: NF4626-Insertion-1
Description: NF4626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4626-Insertion-1 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 811; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 811; E-Value: 0
Query Start/End: Original strand, 8 - 928
Target Start/End: Complemental strand, 31749600 - 31748679
Alignment:
| Q |
8 |
gtgtagcatcaaaattatggattctgttcctgaaggatgagcagtgagagaaacctaaggtatgtcctcctacattagggtaaatagagacatcactgta |
107 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||| |||||||||| |
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| T |
31749600 |
gtgtagcatcaaaattatggattctgtttctgaaggatgagcagtgagagaatcctaaggtatgtcctcctacataagggtaaaaagagccatcactgta |
31749501 |
T |
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| Q |
108 |
caccatactcatgtatagattataataagactactagaaataattgaattaactatggaatttagagagtgagagagnnnnnnnnntataaaattagaca |
207 |
Q |
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| T |
31749500 |
aatcatactcatgtatagattataataagactactagaaataattgaattaactatggaatttagagagtgagagagaaaaatatatataaaattagaca |
31749401 |
T |
|
| Q |
208 |
aaattagagatgtggtgcaccaaaaagcatcgcattgctagaaaatggaggctaaaggtggtttataaacacgcacactcctcattcctcaacctaccaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31749400 |
aaattagagatgtggtgcaccaaaaagcatcgcattgctagaaaatggaggctaaaggtggtttataaacacgcacactcctcattcctcaacctaccaa |
31749301 |
T |
|
| Q |
308 |
ggtgcttttcaattaagtcaacatattggccactttgggttttgtgtgtaagtggattgaggagtgtgagtgat-ataaaccactcttagtctcgatttc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31749300 |
ggtgcttttcaattaagtcaacatattggccactttgggttttgtgtgtaagtggattgaggagtgtgagtgattataaaccactcttagtctcgatttt |
31749201 |
T |
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| Q |
407 |
caagcaatgtgagactttttggtgtaccctcgattcccaaataacgtgggactttttagtgtattggaacaatatcctggtcaagcagaaagggtctatc |
506 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31749200 |
caagcaatgtgagactttttggtgtagcctcgattcccaagtaacgtgggactttttagtgtattggaacaatatcctggtcaagcagaaagggtctatc |
31749101 |
T |
|
| Q |
507 |
atcccttgtgcgtactggcttaggccctcgattcccatagacgacaccaacgtttcaacctcaagtccactacattgcctttttgaggtattgtccactt |
606 |
Q |
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| T |
31749100 |
atcccttgtgcgtactggcttaggcccttgattcccatagacgacaccaacgtttcaacctcaagtccactacattgcctttttgaggtattgtccactt |
31749001 |
T |
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| Q |
607 |
tgggtctcatgtgtaagtcttcatggttttgtcgttagttaaaaggtgttttgttggattgtggagtgtgagtgtttgtaaagcacctaagccttgatat |
706 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| | |
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| T |
31749000 |
tgggtctcatgtgtaagtcttcatggttttgtcgttagttaaaaggtgttttgttggattgtggagtgtgagtgtttgtaaagtacctaagcctcgattt |
31748901 |
T |
|
| Q |
707 |
tcaagtaatatgagatttattggtattccggagcaaatttcattaccagacaaagctgattaaatttatttttagtaaatggtgaagttttgggcttgta |
806 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31748900 |
tcaagtaatatgagatttattggtattccggagcaaatttcattcccagacaaagctgattaaatttatttttagtaaatggtgaagttttgggcttgta |
31748801 |
T |
|
| Q |
807 |
atatttttacctgacaaagctaccaagtcttccatcgacagacctcttcgagagaagctcttctgtagttgtgatatgttaaaagatggtgatggtaatt |
906 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
31748800 |
atatttttacctgacaaagctaccaagtcttccatcgacagacctctttgagagaagctcttctgtagttgtgatatgttaaaagatggtgacggtaact |
31748701 |
T |
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| Q |
907 |
gtatagtttcactggccttgga |
928 |
Q |
| |
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|||| ||||||||||||||||| |
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| T |
31748700 |
gtatggtttcactggccttgga |
31748679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 9058042 - 9058116
Alignment:
| Q |
8 |
gtgtagcatcaaaattatggattctgttcctgaaggatgagcagtgagagaaacctaaggtatgtcctcctacat |
82 |
Q |
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||||||||| ||| || |||||||||||| ||| ||||||||||||||||| ||||||||||| |||||||||| |
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| T |
9058042 |
gtgtagcattaaagttttggattctgttctggaaagatgagcagtgagagaagcctaaggtatgccctcctacat |
9058116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 813 - 925
Target Start/End: Original strand, 9058211 - 9058323
Alignment:
| Q |
813 |
ttacctgacaaagctaccaagtcttccatcgacagacctcttcgagagaagctcttctgtagttgtgatatgttaaaagatggtgatggtaattgtatag |
912 |
Q |
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|||||||||| ||||||||||||||||| |||| ||||| | |||||||| | ||| || ||||||||||| || | ||||| |||||||||| | | |
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| T |
9058211 |
ttacctgacagagctaccaagtcttccacagacaatgctctttgtgagaagctttgctgcagctgtgatatgttgaatgttggtgctggtaattgtcttg |
9058310 |
T |
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| Q |
913 |
tttcactggcctt |
925 |
Q |
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| T |
9058311 |
tttcactggcctt |
9058323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 434
Target Start/End: Original strand, 19339240 - 19339293
Alignment:
| Q |
381 |
tataaaccactcttagtctcgatttccaagcaatgtgagactttttggtgtacc |
434 |
Q |
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||||||| || |||||||| |||| ||||||||||||||||||||| |||||| |
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| T |
19339240 |
tataaactacccttagtctggattatcaagcaatgtgagactttttgatgtacc |
19339293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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