View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4626-Insertion-2 (Length: 925)
Name: NF4626-Insertion-2
Description: NF4626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4626-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 503; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 8 - 521
Target Start/End: Original strand, 36206981 - 36207495
Alignment:
| Q |
8 |
gttatgtggcttcgtgcataaccattggtgatgttgtagcatgagtgactgtcttatcattgttcttttcattttgggcgtgttgctgactatattgaag |
107 |
Q |
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| T |
36206981 |
gttatgtggcttcgtgcataaccattggtgatgttgtagcatgagtgactgtcttatcattgttcttttcattttgggcgtgttgctgactatattgaag |
36207080 |
T |
|
| Q |
108 |
ggactctaggagagaaacgatcaagtacaaataggtggagccatagaacagaactgaccaatagaaacccaaaatagtataaatcacaataaccagaacc |
207 |
Q |
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| T |
36207081 |
ggactctaggagagaaacgatcaagtacaaataggtggagccatagaacagaactgaccaatagaaacccaaaatagtataaatcacaataaccagaacc |
36207180 |
T |
|
| Q |
208 |
ttcccagtgaagatgaactttaccggagaaaaaagatcgatatcgaaagttccaagtagaacccagcaaaaaacaatgtaactgcagctgagagagggct |
307 |
Q |
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| T |
36207181 |
ttcccagtgaagatgaactttaccggagaaaaaagatcgatatcgaaagttccaagtagaacccagcaaaaaacaatgtaactgcagctgagagagggct |
36207280 |
T |
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| Q |
308 |
gagagcacaaagtgagagaa-cccagcaacacacaaggggaaccctcgcctgactctcaccggaaaggggttaagtcgcctaaagatgtagagatctgtt |
406 |
Q |
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| T |
36207281 |
gagagcacaaagtgagagaaccccagcaacacacaaggggaaccctcgcctgactctcaccggaaaggggttaagtcgcctaaagatgtagagatctgtt |
36207380 |
T |
|
| Q |
407 |
tctttttcgtgaaagaggtagaggaatgaatagatcgaagttgagagagagggtcaaaatgatgcaagatcgggcgggattggagaagaaaagacatcac |
506 |
Q |
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| T |
36207381 |
tctttttcgtgaaagaggtagaggaatgaatagatcgaagttgagagagagggtcaaaatgatgcaagatcgggtgggattggagaagaaaagacatcac |
36207480 |
T |
|
| Q |
507 |
cggaatatcgccgga |
521 |
Q |
| |
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| T |
36207481 |
cggaatatcgccgga |
36207495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 520 - 925
Target Start/End: Original strand, 36208763 - 36209167
Alignment:
| Q |
520 |
gatatcctaaactcaaaatgaaaatttgaaaagaagaaagaagaggaaattaacttgctggcttaacaagacaaataataagaagcttgaataattaaag |
619 |
Q |
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| T |
36208763 |
gatatcctaaactcaaaatgaaaatttgaaaagaagaaagaagaggaaattaacttgctggcttaacaagacaaataataagaagcttgaataattaaag |
36208862 |
T |
|
| Q |
620 |
tggtctattttttgtgcatatgtatgctgaaaaaagaagaagaggaaatgatgctataaacaagagaatcgaactcttacaacaactcaaggtgcgtgcg |
719 |
Q |
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| T |
36208863 |
tggtctattttttgtgcatatgtatgctgaaaaaagaagaagaggaaatgatgctataaacaagagaatcgaactcttacaacaactcaaggtgcgtgcg |
36208962 |
T |
|
| Q |
720 |
ccttgcagtctaactaactgaatgaagtaacggaaagtttcatttgatctgagaagtgagaaagcttcgtttgaccaaattcaaatattcaatttatcat |
819 |
Q |
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| T |
36208963 |
ccttgcagtctaactaactgaacgaagtaacagaaagtttcatttgatctgagaagtgagaaagcttcgtttgaccaaattcaaatattcaatttatcat |
36209062 |
T |
|
| Q |
820 |
attactttattacatagaataatgggggaaaaggggaaatggagaatgatatcctgtttggttg-aaggaaatgaagaatggagatattatttaaaattt |
918 |
Q |
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|||||||||||||| ||||| |||||||| |||||||| ||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
36209063 |
attactttattacaataaataaatggggaaaa-gggaaatgaagaatgatatcttgtttggttgaaaggaaatgaagaat-gagatattatttaaaattt |
36209160 |
T |
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| Q |
919 |
gagttgt |
925 |
Q |
| |
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||||||| |
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| T |
36209161 |
gagttgt |
36209167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 520 - 659
Target Start/End: Original strand, 36185584 - 36185727
Alignment:
| Q |
520 |
gatatcctaaactcaaaatgaaaatttgaaaagaagaaagaagaggaaattaacttgctggcttaacaagacaaataataagaagcttga-----ataat |
614 |
Q |
| |
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| T |
36185584 |
gatatcctaaactcaaaatgaaaatttgaaaaaaagaaagaagaggaaataaacttgctggcttaacaagacaaataattagaa-ctagaagcttatatt |
36185682 |
T |
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| Q |
615 |
taaagtggtctattttttgtgcatatgtatgctgaaaaaagaaga |
659 |
Q |
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| T |
36185683 |
ttaagtggtctattttttgtgtgtatgtgtgctgaaaaaagaaga |
36185727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 686 - 766
Target Start/End: Original strand, 36185740 - 36185813
Alignment:
| Q |
686 |
aatcgaactcttacaacaactcaaggtgcgtgcgccttgcagtctaactaactgaatgaagtaacggaaagtttcatttga |
766 |
Q |
| |
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||||||||||||||||||||||||||| || || |||||||||||||||| |||||||| ||||||||||||||| |
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| T |
36185740 |
aatcgaactcttacaacaactcaaggt--gtatgctttgcagtctaactaac-----gaagtaacagaaagtttcatttga |
36185813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 862 - 925
Target Start/End: Original strand, 36187558 - 36187621
Alignment:
| Q |
862 |
agaatgatatcctgtttggttgaa-ggaaatgaagaatggagatattatttaaaatttgagttgt |
925 |
Q |
| |
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||||||||| | |||||||| ||| |||||||||||||| ||||||||||| ||||||||||||| |
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| T |
36187558 |
agaatgatagcttgtttggtggaaaggaaatgaagaatg-agatattattttaaatttgagttgt |
36187621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 10989305 - 10989228
Alignment:
| Q |
12 |
tgtggcttcgtgcataaccattggtgatgttgtagcatgagtgactgtcttatcattgttcttttcattttgggcgtg |
89 |
Q |
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||||||||| ||| || ||||| | ||||||||||||| ||||||| ||||||||||||||||||| |||||||||| |
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| T |
10989305 |
tgtggcttcttgcgtatccatttgagatgttgtagcataagtgactaccttatcattgttcttttcagtttgggcgtg |
10989228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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