View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4626-Insertion-3 (Length: 547)
Name: NF4626-Insertion-3
Description: NF4626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4626-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 93 - 294
Target Start/End: Original strand, 1917592 - 1917793
Alignment:
| Q |
93 |
gtcgtgatctaaactgtggttcctgagattttttggcagttcagttgatcgttatttagacagattgggtttgagtagctttcggtgcgttttatcgaag |
192 |
Q |
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| T |
1917592 |
gtcgtgatctaaactgtggttcctgagattttttggcagttcagctgatcgttatttagacagattgggtttgagtagctttcggtgcgttttatcgaag |
1917691 |
T |
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| Q |
193 |
aagacaggttggagcatcgcttatgaagctgctgtgatatacttttgtttctctgtcatatcagtggtggtggtttattttagatatctcttgggtagag |
292 |
Q |
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| T |
1917692 |
aagacaggttggagcatcgcttatgaagctgctgtgatatacttttgtttctctgtcatatcagtggtggtggtttattttagatatctcttgggtagag |
1917791 |
T |
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| Q |
293 |
cc |
294 |
Q |
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| T |
1917792 |
cc |
1917793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 359 - 521
Target Start/End: Original strand, 1917858 - 1918029
Alignment:
| Q |
359 |
cacttcctgtatctattttcacacacagagtatatcttgtacttgtgttgtgtttcaatgcaataatatttgtctttgctcttcc---------nnnnnn |
449 |
Q |
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| T |
1917858 |
cacttcctgtatctattttcacacacagagtatatcttgtacttgtgttgtgtttcaatgcaataatatttgtctttgctcttccaaaaaaaaaaaaaaa |
1917957 |
T |
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| Q |
450 |
nnnnnctaagtccaacattaagggtgcaaaggaagacatcaagaagaagatatgcacgacacaatgcagatt |
521 |
Q |
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| T |
1917958 |
aactcataagtccaacattaagggtgcaaaggaagacatcaagaagaagatatgcacgacacaatgcagatt |
1918029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 96 - 252
Target Start/End: Complemental strand, 29120963 - 29120805
Alignment:
| Q |
96 |
gtgatctaaactgtggttcctgagatttt-ttggcagttcagttgatcgttatttagacagattgggtttgagtagctttcggtgcgttttatcgaagaa |
194 |
Q |
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| T |
29120963 |
gtgatttaaactgtggtttttgagattttatttgcagttcagctgttcgttttttagtcagattgggtttgagtagcttttggtgtgttttatcgaagaa |
29120864 |
T |
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| Q |
195 |
gacaggttggagcatcgcttatgaagctgctgtgatata-cttttgtttctctgtcata |
252 |
Q |
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| T |
29120863 |
gacaggtcagagcatcgcttatggagctgttgtgatatattttttgtttctctgtcata |
29120805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 359 - 441
Target Start/End: Original strand, 32252551 - 32252633
Alignment:
| Q |
359 |
cacttcctgtatctattttcacacacagagtatatcttgtacttgtgttgtgtttcaatgcaataatatttgtctttgctctt |
441 |
Q |
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| T |
32252551 |
cactttctgtatctattttcacacacaaagtatacattgtatttgtgttgtgttttaatgcaataatatttgtctttgctctt |
32252633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 359 - 442
Target Start/End: Original strand, 44516194 - 44516285
Alignment:
| Q |
359 |
cacttcctgtatctattttcacacacagagtatatcttg--------tacttgtgttgtgtttcaatgcaataatatttgtctttgctcttc |
442 |
Q |
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||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
44516194 |
cacttcctgtatctattttcacacacaaagtataccttgtacacttgtacttgtgttgtgtttcaattcaataaaatttgtctttgctcttc |
44516285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 273
Target Start/End: Original strand, 44515990 - 44516069
Alignment:
| Q |
196 |
acaggttggagcatcgcttatgaagctgctgtgatatactttt--gtttctctgtcatatcagtggtggtggtttatttt |
273 |
Q |
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| T |
44515990 |
acaggtcggagcatcgcttatggagccattgtgatatatttttttgtttgtctgtcatatttgtggtggtggtttatttt |
44516069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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