View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4626-Insertion-4 (Length: 295)
Name: NF4626-Insertion-4
Description: NF4626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4626-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 276
Target Start/End: Original strand, 45846615 - 45846883
Alignment:
| Q |
8 |
aagacgaattcgggaccagacggtggtcgggaatttgcgataaagacgaggaacagtgttaggaaaataagacgagcttaagtacacgatatgatatggt |
107 |
Q |
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| T |
45846615 |
aagacgaattcggaaccagacggtggtcgggaatttgcgataaagacgaggaacagtgttaggaatataagacgagcttaagtacacgatatgatatggt |
45846714 |
T |
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| Q |
108 |
atgataaactaggcccagttctatgaaaattgctttttacccctatgaacattcttaaaaaacacatgnnnnnnnntatgtttttgagtagttaaccatc |
207 |
Q |
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| T |
45846715 |
atgataaactaggcccagttctatgaaaattgctttttacccctatgaacattcttaaaaaacacatg---aaaaatatgtttttgagtagttaaccatc |
45846811 |
T |
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| Q |
208 |
gttccaactttttggcagt---taactaccgttccataaaaataaaggaatatttttctccctcttacattc |
276 |
Q |
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| T |
45846812 |
gttccaactttttggctgtaaataactaccgtttcataaaaataaaggaatattattctccctcttacattc |
45846883 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 291
Target Start/End: Original strand, 27815204 - 27815255
Alignment:
| Q |
240 |
ataaaaataaaggaatattt-ttctccctcttacattcacaaaagccttttaa |
291 |
Q |
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| T |
27815204 |
ataaaaataaaggaatatttcttctccctc-tacattctcaaaagacttttaa |
27815255 |
T |
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