View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4626-Insertion-5 (Length: 187)
Name: NF4626-Insertion-5
Description: NF4626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4626-Insertion-5 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 8 - 187
Target Start/End: Original strand, 37136014 - 37136193
Alignment:
| Q |
8 |
ctgtgtatgccaattatattgccgtgattcccaattacaacggcagtgttccaaataatttctccgtggttcatatccctctcaagaattgggcttataa |
107 |
Q |
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| T |
37136014 |
ctgtgtatgccaattatattgccgtgattcccaattacaacggcagtgttccaaataatttctccgtggttcatatccctctcaagaattgggcttataa |
37136113 |
T |
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| Q |
108 |
tcaccatgttatacttcagtgcaaagcttcgcaaaaattcagttgattccccgtcaacaggttctgcaaattcacaccac |
187 |
Q |
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| T |
37136114 |
tcaccatgttatacttcagtgcaaagcttcgcaaaaattcagttgattccccgtcaacaggttctgcaaattcacaccac |
37136193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 8 - 186
Target Start/End: Original strand, 37139953 - 37140131
Alignment:
| Q |
8 |
ctgtgtatgccaattatattgccgtgattcccaattacaacggcagtgttccaaataatttctccgtggttcatatccctctcaagaattgggcttataa |
107 |
Q |
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| T |
37139953 |
ctgtgtattccaattatattgccgtgattcccaattacgacggcagtgttccacataacctctccatggttcacatccctttcaagaattgggcttataa |
37140052 |
T |
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| Q |
108 |
tcaccatgttatacttcagtgcaaagcttcgcaaaaattcagttgattccccgtcaacaggttctgcaaattcacacca |
186 |
Q |
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| T |
37140053 |
tcaccatgttatacttctttgcaaagctttgcaaaaattttgttgattctccatcggcaggttctgcaaattcacacca |
37140131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 8e-66; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 8e-66
Query Start/End: Original strand, 8 - 186
Target Start/End: Original strand, 12077455 - 12077632
Alignment:
| Q |
8 |
ctgtgtatgccaattatattgccgtgattcccaattacaacggcagtgttccaaataatttctccgtggttcatatccctctcaagaattgggcttataa |
107 |
Q |
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|||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||| |
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| T |
12077455 |
ctgtgtatcccaattatattgtcgtgattcccaatcacaacggcagtgttccaaataacctcttcgtggttcatatccctctcaagaaatgggcttataa |
12077554 |
T |
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| Q |
108 |
tcaccatgttatacttcagtgcaaagcttcgcaaaaattcagttgattccccgtcaacaggttctgcaaattcacacca |
186 |
Q |
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| T |
12077555 |
tcaccatgttatacttcagtgcaaaaattcgcaaaaattcagttgattccctgt-aacaggttctacaaattcacacca |
12077632 |
T |
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