View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4626-Insertion-7 (Length: 102)
Name: NF4626-Insertion-7
Description: NF4626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4626-Insertion-7 |
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| [»] chr1 (3 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 91; Significance: 1e-44; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 1e-44
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 8297053 - 8297147
Alignment:
| Q |
8 |
cattttaccctccatagtttgcatttcaactctgatactttctaagttcccttttaattccattctatcctcaatagacttgatagactcgagaa |
102 |
Q |
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| T |
8297053 |
cattttaccctccatagtttgcatttcaactctgatactttctaagttcccttttaattccattctatcctccatagacttgatagactcgagaa |
8297147 |
T |
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Target: chr1; HSP #2
Raw Score: 70; E-Value: 4e-32
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 8300640 - 8300725
Alignment:
| Q |
17 |
ctccatagtttgcatttcaactctgatactttctaagttcccttttaattccattctatcctcaatagacttgatagactcgagaa |
102 |
Q |
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| T |
8300640 |
ctccatagtttgcatttcaactctgatactttctgagttcccttttaattccactctatcctccatagacttgatagactcaagaa |
8300725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 6e-28
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 18279586 - 18279500
Alignment:
| Q |
16 |
cctccatagtttgcatttcaactctgatactttctaagttcccttttaattccattctatcctcaatagacttgatagactcgagaa |
102 |
Q |
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| T |
18279586 |
cctccatagtttgcttttcaactttgacactttctaagttcccttttaattccattctatcctccaaagacttaatagactcgagaa |
18279500 |
T |
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Target: chr6 (Bit Score: 75; Significance: 4e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 4e-35
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 1145255 - 1145349
Alignment:
| Q |
8 |
cattttaccctccatagtttgcatttcaactctgatactttctaagttcccttttaattccattctatcctcaatagacttgatagactcgagaa |
102 |
Q |
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| T |
1145255 |
cattttatcctccatagtttgcatttcaattctgatactttctaagttcccttttaattccattctatcctccagatacttgatagactcgagaa |
1145349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 21120586 - 21120537
Alignment:
| Q |
16 |
cctccatagtttgcatttcaactctgatactttctaagttcccttttaat |
65 |
Q |
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| T |
21120586 |
cctccatagtttgcatttcaactctgagactttccaagttctcgtttaat |
21120537 |
T |
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