View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4626_high_2 (Length: 323)
Name: NF4626_high_2
Description: NF4626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4626_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 51022632 - 51022933
Alignment:
| Q |
16 |
aaaaatgggat-ttttatgtgaatttgtttattgtgcagctactaacgatggcagcagagaccttcctatttacctctgagtccgtgaatgagggacacc |
114 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51022632 |
aaaaatgggatcttttatgtgaatttgtttattgtgcagcttttaacgatggcagcagagaccttcctatttacctctgagtccgtgaatgagggacacc |
51022731 |
T |
|
| Q |
115 |
ctgacaagctttgtgatcaaatctctgatgctgtgctagatgcttgccttgaacaggacgtagacagcaaggttgcttgtgaaacttgcaccaagactaa |
214 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51022732 |
ctgacaagctctgtgatcaaatctctgatgctgtgctagatgcttgccttgaacaggacgtagacagcaaggttgcttgtgaaacttgcaccaagactaa |
51022831 |
T |
|
| Q |
215 |
cttggttatggtctttggtgagatcacaaccaaggctaaggttgactatgagaaaattgtgcgtgacacctgcagaaagattgggtttgtttctgatgat |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51022832 |
cttggttatggtctttggtgagatcacaaccaaggctaaggttgactatgagaaaattgtgcgtgacacctgcagaaagattgggtttgtttctgatgat |
51022931 |
T |
|
| Q |
315 |
gt |
316 |
Q |
| |
|
|| |
|
|
| T |
51022932 |
gt |
51022933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 62 - 316
Target Start/End: Complemental strand, 20526247 - 20525993
Alignment:
| Q |
62 |
gatggcagcagagaccttcctatttacctctgagtccgtgaatgagggacaccctgacaagctttgtgatcaaatctctgatgctgtgctagatgcttgc |
161 |
Q |
| |
|
||||||| |||| || ||||||| || ||||| || ||||| ||||||||||| ||||||||||| || || ||||||||||| || |||||||||||| |
|
|
| T |
20526247 |
gatggcaacagaaactttcctatacacatctgaatctgtgaacgagggacaccccgacaagctttgcgaccagatctctgatgccgttctagatgcttgc |
20526148 |
T |
|
| Q |
162 |
cttgaacaggacgtagacagcaaggttgcttgtgaaacttgcaccaagactaacttggttatggtctttggtgagatcacaaccaaggctaaggttgact |
261 |
Q |
| |
|
|| || || || ||||||||| ||||| |||||||||||||| ||||| ||| |||||||||||||||||||||||||||| || || || ||||||| |
|
|
| T |
20526147 |
ctcgagcaagatccagacagcaaagttgcatgtgaaacttgcacaaagaccaacatggttatggtctttggtgagatcacaacaaaagcaaatgttgact |
20526048 |
T |
|
| Q |
262 |
atgagaaaattgtgcgtgacacctgcagaaagattgggtttgtttctgatgatgt |
316 |
Q |
| |
|
| || || ||||| ||| | || ||||| || || || |||||||| |||||||| |
|
|
| T |
20526047 |
acgaaaagattgtccgtaaaacatgcaggaacataggttttgtttcagatgatgt |
20525993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 75 - 283
Target Start/End: Original strand, 45207688 - 45207896
Alignment:
| Q |
75 |
accttcctatttacctctgagtccgtgaatgagggacaccctgacaagctttgtgatcaaatctctgatgctgtgctagatgcttgccttgaacaggacg |
174 |
Q |
| |
|
||||| |||||||| ||||| || ||||| ||||| ||||| |||||||| || || || ||||||||||| ||||| ||||| || ||||||||||| |
|
|
| T |
45207688 |
acctttctatttacatctgaatcagtgaacgagggtcaccccgacaagctgtgcgaccagatctctgatgcagtgctcgatgcctgtcttgaacaggatc |
45207787 |
T |
|
| Q |
175 |
tagacagcaaggttgcttgtgaaacttgcaccaagactaacttggttatggtctttggtgagatcacaaccaaggctaaggttgactatgagaaaattgt |
274 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||| |||| ||||||||||| || || ||||||||||| || || ||||||||||| || || |
|
|
| T |
45207788 |
ctgacagcaaggttgcctgtgagacttgcaccaagactaacatggtcatggtctttggagaaataacaaccaaggccaatgtagactatgagaagatcgt |
45207887 |
T |
|
| Q |
275 |
gcgtgacac |
283 |
Q |
| |
|
|||||||| |
|
|
| T |
45207888 |
tcgtgacac |
45207896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 290
Target Start/End: Original strand, 41212896 - 41213003
Alignment:
| Q |
183 |
aaggttgcttgtgaaacttgcaccaagactaacttggttatggtctttggtgagatcacaaccaaggctaaggttgactatgagaaaattgtgcgtgaca |
282 |
Q |
| |
|
|||||||| ||||| || || || ||||||||| |||||||||||||||||||||| ||||||||||||| || ||||||||||||| || || |||| |
|
|
| T |
41212896 |
aaggttgcatgtgagacatgtacaaagactaacatggttatggtctttggtgagataacaaccaaggctaccgtgaactatgagaaaatagttcgagaca |
41212995 |
T |
|
| Q |
283 |
cctgcaga |
290 |
Q |
| |
|
| |||||| |
|
|
| T |
41212996 |
cttgcaga |
41213003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 180 - 316
Target Start/End: Complemental strand, 27719022 - 27718886
Alignment:
| Q |
180 |
agcaaggttgcttgtgaaacttgcaccaagactaacttggttatggtctttggtgagatcacaaccaaggctaaggttgactatgagaaaattgtgcgtg |
279 |
Q |
| |
|
||||||||||| || || || || || || |||||| ||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| || |||| |
|
|
| T |
27719022 |
agcaaggttgcctgcgagacctgtacaaaaactaacatggttatggtctttggtgaaatcacaaccaaggcaaaggtggactatgagaaaatagttcgtg |
27718923 |
T |
|
| Q |
280 |
acacctgcagaaagattgggtttgtttctgatgatgt |
316 |
Q |
| |
|
|||| ||||| | ||||||||||| |||| |||||| |
|
|
| T |
27718922 |
acacttgcaggagtattgggtttgtgtctgctgatgt |
27718886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University