View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4627-Insertion-10 (Length: 336)

Name: NF4627-Insertion-10
Description: NF4627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4627-Insertion-10
NF4627-Insertion-10
[»] chr2 (11 HSPs)
chr2 (8-336)||(15019421-15019749)
chr2 (8-315)||(15012929-15013236)
chr2 (8-315)||(31968846-31969153)
chr2 (7-336)||(14528446-14528775)
chr2 (7-336)||(14542672-14543001)
chr2 (58-336)||(14512047-14512325)
chr2 (59-315)||(14533732-14533988)
chr2 (70-309)||(14519899-14520138)
chr2 (83-315)||(15004207-15004439)
chr2 (7-315)||(15007518-15007826)
chr2 (251-315)||(14547063-14547127)
[»] chr4 (1 HSPs)
chr4 (46-145)||(17357245-17357345)


Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 8 - 336
Target Start/End: Original strand, 15019421 - 15019749
Alignment:
Q  8 cacttctcattcccactttcactcaaatgcagcagcatcacaacatctcaatcagaatcaatcacacaaccttttgctgtatcttatcttatcaacaatt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15019421 cacttctcattcccactttcactcaaatgcagcagcatcacaacatctcaatcagaatcaatcacacaaccttttgctgtatcttatcttatcaacaatt 15019520  T
Q  108 ttgatttctcaactgaatcagctctcaaagctttcaacgtcaggcacgttcgtttcaataccccagataagcctgaatcagtcatcaacttcttaaaaaa 207  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||     
T  15019521 ttgatttctcaactgaatcagctctcaaagctttcaacctcaggcacgttcgtttcaataccccagataggcctgactcagtcatcaacttcttaaaaag 15019620  T
Q  208 ttatggcttttcaaattccaacattcgcatcatgatnnnnnnngcaccttggttactttcatcacaaccccacaacatgttattgccaaagtttcaattt 307  Q
     |||||||||||||| ||||||||||||||||| ||       |||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  15019621 ctatggcttttcaaactccaacattcgcatcatcatcaaaaaagcaccttggttactttcatcacaaccccacaaaatgttattgccaaagtttcaattc 15019720  T
Q  308 tttctatctgatgccgcttattcctctga 336  Q
    ||||||||||||||  |||||||||||||    
T  15019721 tttctatctgatgcttcttattcctctga 15019749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 315
Target Start/End: Original strand, 15012929 - 15013236
Alignment:
Q  8 cacttctcattcccactttcactcaaatgcagcagcatcacaacatctcaatcagaatcaatcacacaaccttttgctgtatcttatcttatcaacaatt 107  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15012929 cacttctcattcccattctcactcaaatgcagcagcatcacaacatctcaatcagaatcaatcacacaaccttttgctgtatcttatcttatcaacaatt 15013028  T
Q  108 ttgatttctcaactgaatcagctctcaaagctttcaacgtcaggcacgttcgtttcaataccccagataagcctgaatcagtcatcaacttcttaaaaaa 207  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||  ||||    
T  15013029 ttgatttctcaactgaatcagctctcaaagctttcaacctcaggcaagttcgtttcaataccccagataatcctgactcagtcatcaacttctttcaaaa 15013128  T
Q  208 ttatggcttttcaaattccaacattcgcatcatgatnnnnnnngcaccttggttactttcatcacaaccccacaacatgttattgccaaagtttcaattt 307  Q
      |||| |||||| | ||  |||| |||||||| ||       ||||| |||||||||||||||||||||||||| | ||||||||| ||||||||||||    
T  15013129 ccatggtttttcacactctgacatacgcatcatcatcaaaaaagcaccatggttactttcatcacaaccccacaaaaggttattgcctaagtttcaattt 15013228  T
Q  308 tttctatc 315  Q
    ||| ||||    
T  15013229 tttatatc 15013236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 8 - 315
Target Start/End: Original strand, 31968846 - 31969153
Alignment:
Q  8 cacttctcattcccactttcactcaaatgcagcagcatcacaacatctcaatcagaatcaatcacacaaccttttgctgtatcttatcttatcaacaatt 107  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31968846 cacttctcattcccattttcactcaaatgcagcagcatcacaacatctcaatcagaatcaatcacacaaccttttgctgtatcttatcttatcaacaatt 31968945  T
Q  108 ttgatttctcaactgaatcagctctcaaagctttcaacgtcaggcacgttcgtttcaataccccagataagcctgaatcagtcatcaacttcttaaaaaa 207  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||| ||||||| ||||| || || |||| ||||||  ||||    
T  31968946 ttgatttctcaactgaatcagctctcaaagctttcaacctcaagcaggttcgtttcaatacctcagataatcctgattctgttatcaccttctttcaaaa 31969045  T
Q  208 ttatggcttttcaaattccaacattcgcatcatgatnnnnnnngcaccttggttactttcatcacaaccccacaacatgttattgccaaagtttcaattt 307  Q
      |||| |||||||| ||  |||| |||||| | ||       ||||| |||||||||||||||||||||||||| | ||||||||| ||||||||||||    
T  31969046 ccatggtttttcaaactctgacatacgcatcttcatcaaaaaagcaccatggttactttcatcacaaccccacaaaaggttattgcctaagtttcaattt 31969145  T
Q  308 tttctatc 315  Q
    ||| ||||    
T  31969146 tttatatc 31969153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 7 - 336
Target Start/End: Original strand, 14528446 - 14528775
Alignment:
Q  7 acacttctcattcccactttcactcaaatgcagcagcatcacaacatctcaatcagaatcaatcacacaaccttttgctgtatcttatcttatcaacaat 106  Q
    |||||||||||||||| ||||||||| | |   | ||| ||||||||||||||| |||||| ||||||| || || |||| ||||||||| |||||||||    
T  14528446 acacttctcattcccattttcactcacaagattctgcaccacaacatctcaatctgaatcagtcacacatccattcgctgcatcttatctcatcaacaat 14528545  T
Q  107 tttgatttctcaactgaatcagctctcaaagctttcaacgtcaggcacgttcgtttcaataccccagataagcctgaatcagtcatcaacttcttaaaaa 206  Q
    ||||  ||||||  |||||| |||||||||||||||||| ||| ||| ||||||||||||||| ||||||| ||||| |||||||||| ||||||  |||    
T  14528546 tttgggttctcacatgaatctgctctcaaagctttcaacctcaagcaagttcgtttcaataccgcagataaacctgattcagtcatcaccttctttcaaa 14528645  T
Q  207 attatggcttttcaaattccaacattcgcatcatgatnnnnnnngcaccttggttactttcatcacaaccccacaacatgttattgccaaagtttcaatt 306  Q
    || ||||||||||| |   |||||| |||||||||||       ||||| |||||||||||||||||||||||||| | ||| |||||||||||||||||    
T  14528646 atcatggcttttcacacgacaacatacgcatcatgatcagaagagcaccatggttactttcatcacaaccccacaaaaggtttttgccaaagtttcaatt 14528745  T
Q  307 ttttctatctgatgccgcttattcctctga 336  Q
    |||||||||  |||| |||| |||||||||    
T  14528746 ttttctatccaatgctgcttcttcctctga 14528775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 7 - 336
Target Start/End: Original strand, 14542672 - 14543001
Alignment:
Q  7 acacttctcattcccactttcactcaaatgcagcagcatcacaacatctcaatcagaatcaatcacacaaccttttgctgtatcttatcttatcaacaat 106  Q
    |||||||||||||| | ||||||||| | |   | ||| ||||||||||||||| |||||| ||||||| || || |||| ||||||||| |||||||||    
T  14542672 acacttctcattccaaatttcactcacaagattctgcaccacaacatctcaatctgaatcagtcacacatccattcgctgcatcttatctcatcaacaat 14542771  T
Q  107 tttgatttctcaactgaatcagctctcaaagctttcaacgtcaggcacgttcgtttcaataccccagataagcctgaatcagtcatcaacttcttaaaaa 206  Q
    ||||  ||||||  |||||| |||||||||||||||||| ||| ||| ||||||||||||||| ||||||| ||||| |||||||||| ||||||  |||    
T  14542772 tttgggttctcacatgaatctgctctcaaagctttcaacctcaagcaagttcgtttcaataccgcagataaacctgattcagtcatcaccttctttcaaa 14542871  T
Q  207 attatggcttttcaaattccaacattcgcatcatgatnnnnnnngcaccttggttactttcatcacaaccccacaacatgttattgccaaagtttcaatt 306  Q
    || ||||||||||| |   |||||| |||||||||||       ||||| |||||||||||||||||||||||||| | ||| |||||||||||||||||    
T  14542872 atcatggcttttcacacgacaacatacgcatcatgatcagaagagcaccatggttactttcatcacaaccccacaaaaggtttttgccaaagtttcaatt 14542971  T
Q  307 ttttctatctgatgccgcttattcctctga 336  Q
    |||||||||  |||| |||| |||||||||    
T  14542972 ttttctatccaatgctgcttcttcctctga 14543001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 58 - 336
Target Start/End: Original strand, 14512047 - 14512325
Alignment:
Q  58 atcagaatcaatcacacaaccttttgctgtatcttatcttatcaacaattttgatttctcaactgaatcagctctcaaagctttcaacgtcaggcacgtt 157  Q
    |||||||||| ||||||| || || |||| ||||||||| ||||||||||||| |||| ||  |||||||||||||||| ||||||||  || ||| |||    
T  14512047 atcagaatcagtcacacatccattcgctgcatcttatctcatcaacaattttggtttcacacatgaatcagctctcaaatctttcaactacaagcatgtt 14512146  T
Q  158 cgtttcaataccccagataagcctgaatcagtcatcaacttcttaaaaaattatggcttttcaaattccaacattcgcatcatgatnnnnnnngcacctt 257  Q
    |||||||||||| ||||||| ||||| |||||||||| ||||||  ||||| ||||||||||| |   |||||| |||||||||||       ||||| |    
T  14512147 cgtttcaataccgcagataaacctgattcagtcatcaccttctttcaaaatcatggcttttcacacgacaacatacgcatcatgatcagaagagcaccat 14512246  T
Q  258 ggttactttcatcacaaccccacaacatgttattgccaaagtttcaattttttctatctgatgccgcttattcctctga 336  Q
    ||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||  |||| |||| |||||||||    
T  14512247 ggttactttcatcacaaccccacaaaaggtttttgccaaagtttcaattttttctatccaatgctgcttcttcctctga 14512325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 59 - 315
Target Start/End: Original strand, 14533732 - 14533988
Alignment:
Q  59 tcagaatcaatcacacaaccttttgctgtatcttatcttatcaacaattttgatttctcaactgaatcagctctcaaagctttcaacgtcaggcacgttc 158  Q
    |||||||||| |||||| || ||  ||||||| || || |||||||||||||  ||||||  |||||| ||||||||||||||||||  || ||| ||||    
T  14533732 tcagaatcaaacacacatccattctctgtatcatacctcatcaacaattttggattctcacatgaatctgctctcaaagctttcaacaacaagcaggttc 14533831  T
Q  159 gtttcaataccccagataagcctgaatcagtcatcaacttcttaaaaaattatggcttttcaaattccaacattcgcatcatgatnnnnnnngcaccttg 258  Q
    |||||||||||||||||||  |||| || || |||| ||||||  ||||  |||| ||| |||| |||||||| |||||||| ||       ||||||||    
T  14533832 gtttcaataccccagataatgctgattctgttatcaccttctttcaaaaccatggttttccaaactccaacatacgcatcatcatccaaaaggcaccttg 14533931  T
Q  259 gttactttcatcacaaccccacaacatgttattgccaaagtttcaattttttctatc 315  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  14533932 gttactttcatcacaaccccacaaaaggttattgccaaagtttcaattttttctatc 14533988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 70 - 309
Target Start/End: Original strand, 14519899 - 14520138
Alignment:
Q  70 cacacaaccttttgctgtatcttatcttatcaacaattttgatttctcaactgaatcagctctcaaagctttcaacgtcaggcacgttcgtttcaatacc 169  Q
    ||||||||| ||||||||||| || ||  ||||||| |||| |||||||  |||||| ||||||||||||||||||  ||| || |||||||||||||||    
T  14519899 cacacaaccatttgctgtatcatacctcgtcaacaaatttggtttctcacatgaatcggctctcaaagctttcaacaacagacaggttcgtttcaatacc 14519998  T
Q  170 ccagataagcctgaatcagtcatcaacttcttaaaaaattatggcttttcaaattccaacattcgcatcatgatnnnnnnngcaccttggttactttcat 269  Q
    |||||||| ||||| || || |||| ||||||  ||||  ||||||||||| |    ||||| |||||||| ||       ||||| |||||||||||||    
T  14519999 ccagataatcctgattctgttatcaccttctttcaaaaccatggcttttcacacgataacatacgcatcatcatcacaaaagcaccatggttactttcat 14520098  T
Q  270 cacaaccccacaacatgttattgccaaagtttcaattttt 309  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  14520099 cacaaccccacaaaatggtattgccaaagtttcaattttt 14520138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 83 - 315
Target Start/End: Complemental strand, 15004439 - 15004207
Alignment:
Q  83 gctgtatcttatcttatcaacaattttgatttctcaactgaatcagctctcaaagctttcaacgtcaggcacgttcgtttcaataccccagataagcctg 182  Q
    |||||||| || ||| |||||||||||| |||||||||||||||| |||||||||||||||||  || ||| ||||||||||||||||||||||| ||||    
T  15004439 gctgtatcataccttgtcaacaattttggtttctcaactgaatcaactctcaaagctttcaacaacaagcaggttcgtttcaataccccagataatcctg 15004340  T
Q  183 aatcagtcatcaacttcttaaaaaattatggcttttcaaattccaacattcgcatcatgatnnnnnnngcaccttggttactttcatcacaaccccacaa 282  Q
    | || || |||| ||||||  ||||| |||| ||||||      ||||| |||||||| ||       |||||||||||||||||||| |||||||||||    
T  15004339 attctgttatcaccttctttcaaaatcatggtttttcactcgataacatacgcatcatcatcacaaaagcaccttggttactttcatcgcaaccccacaa 15004240  T
Q  283 catgttattgccaaagtttcaattttttctatc 315  Q
        |||||| ||||||||||||||||||||||    
T  15004239 aggtttattgtcaaagtttcaattttttctatc 15004207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 7 - 315
Target Start/End: Original strand, 15007518 - 15007826
Alignment:
Q  7 acacttctcattcccactttcactcaaatgcagcagcatcacaacatctcaatcagaatcaatcacacaaccttttgctgtatcttatcttatcaacaat 106  Q
    |||||||||||||||| ||||||||| | |   ||||| |||||||||   ||||||||| | ||| || || || |||| ||| || || ||| |||||    
T  15007518 acacttctcattcccaatttcactcacaagattcagcaccacaacatcaacatcagaatccaacactcacccattcgctgcatcctacctcatcgacaat 15007617  T
Q  107 tttgatttctcaactgaatcagctctcaaagctttcaacgtcaggcacgttcgtttcaataccccagataagcctgaatcagtcatcaacttcttaaaaa 206  Q
    |||| ||||||| || |||| ||||| ||||||||||||  ||  || ||||||||||||||||  || |||||| | |||||  ||| ||||||  |||    
T  15007618 tttggtttctcacctcaatctgctcttaaagctttcaacaacaaacaggttcgtttcaatacccttgaaaagcctaattcagttctcaccttctttcaaa 15007717  T
Q  207 attatggcttttcaaattccaacattcgcatcatgatnnnnnnngcaccttggttactttcatcacaaccccacaacatgttattgccaaagtttcaatt 306  Q
    || ||||||||||| |    ||||| |||||||| ||       | ||| |||||||||||||||||||||||||| |||||||||||||||||| |||     
T  15007718 atcatggcttttcacacgaaaacatacgcatcatcattagaaaagaaccatggttactttcatcacaaccccacaaaatgttattgccaaagtttgaata 15007817  T
Q  307 ttttctatc 315  Q
    |||||||||    
T  15007818 ttttctatc 15007826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 315
Target Start/End: Original strand, 14547063 - 14547127
Alignment:
Q  251 gcaccttggttactttcatcacaaccccacaacatgttattgccaaagtttcaattttttctatc 315  Q
    ||||| ||||||||||||| |||||||||||| ||  | ||||| |||||| |||||||||||||    
T  14547063 gcaccatggttactttcattacaaccccacaatataattttgcccaagtttgaattttttctatc 14547127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 145
Target Start/End: Complemental strand, 17357345 - 17357245
Alignment:
Q  46 cacaacatctcaatcagaatcaatcacacaaccttttgctgtatcttatcttatcaacaattttgatttctcaactg-aatcagctctcaaagctttcaa 144  Q
    |||||||||  | ||||||| | |||||| ||| ||||||||||| ||||| ||| ||||||||| |||| |  ||| |||| ||| |||||||||||||    
T  17357345 cacaacatcagagtcagaattagtcacaccaccatttgctgtatcgtatctcatcgacaattttggtttcactcctgaaatctgctttcaaagctttcaa 17357246  T
Q  145 c 145  Q
    |    
T  17357245 c 17357245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University