View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4627-Insertion-13 (Length: 186)
Name: NF4627-Insertion-13
Description: NF4627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4627-Insertion-13 |
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| [»] scaffold0153 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: scaffold0153 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: scaffold0153
Description:
Target: scaffold0153; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 8 - 186
Target Start/End: Original strand, 36425 - 36603
Alignment:
| Q |
8 |
cgaagcaagaagaaaagggttcacgaactcgaagcagcaacagagaaatggaagataacatccaaaatcgnnnnnnnaatagaacttctcgaacaagaac |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36425 |
cgaagcaagaagaaaagggttcacgaactcgaagcagcaacagagaaatggaagataacatccaaaatcgtttttttaatagaacttctcgaacaagaac |
36524 |
T |
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| Q |
108 |
cagaaattgttattcccgttcgatccctttcacattatcgtaaacaaatcagccttccaaaacctcacagaatctctga |
186 |
Q |
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| T |
36525 |
cagaaattgttattcccgttcgatccctttcacattatcgtaaacaaatcagccttccaaaacctcacagaatctctga |
36603 |
T |
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Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 8 - 186
Target Start/End: Original strand, 48661654 - 48661832
Alignment:
| Q |
8 |
cgaagcaagaagaaaagggttcacgaactcgaagcagcaacagagaaatggaagataacatccaaaatcgnnnnnnnaatagaacttctcgaacaagaac |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
48661654 |
cgaagcaagaagaaaagggttcacgaactcgaagcagcaacagagaaatggaagataacatccaaaatcgtttttttaatagaacttctcgaacaagaac |
48661753 |
T |
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| Q |
108 |
cagaaattgttattcccgttcgatccctttcacattatcgtaaacaaatcagccttccaaaacctcacagaatctctga |
186 |
Q |
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| T |
48661754 |
cagaaattgttattcccgttcgatccctttcacattatcgtaaacaaatcagccttccaaaacctcacagaatctctga |
48661832 |
T |
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