View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4627-Insertion-15 (Length: 174)
Name: NF4627-Insertion-15
Description: NF4627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4627-Insertion-15 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 70; Significance: 8e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 8e-32
Query Start/End: Original strand, 101 - 174
Target Start/End: Complemental strand, 32702228 - 32702155
Alignment:
| Q |
101 |
aaagataaagagcaaaatagttatttgtcaaaacaaattctttttattctttatgctcaatttatttctcttaa |
174 |
Q |
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| T |
32702228 |
aaagatagagagcaaaatagttatttgtcaaaacaaattctttttattctttatgctcaatttatttctcttaa |
32702155 |
T |
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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 32702299 - 32702259
Alignment:
| Q |
39 |
ataatagttacagcatcctacacatttagataccataatag |
79 |
Q |
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| T |
32702299 |
ataatagttacaacatcctacacatttagataccataatag |
32702259 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 38
Target Start/End: Original strand, 12356406 - 12356436
Alignment:
| Q |
8 |
ccgggggcaccggttagcaggacccattaaa |
38 |
Q |
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| T |
12356406 |
ccgggggcaccggttagcaggacccattaaa |
12356436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 37
Target Start/End: Original strand, 272382 - 272411
Alignment:
| Q |
8 |
ccgggggcaccggttagcaggacccattaa |
37 |
Q |
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| T |
272382 |
ccgggggcaccggttagcaggacccattaa |
272411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 28; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 34333445 - 34333479
Alignment:
| Q |
8 |
ccgggggcaccggttagcaggacccattaaaataat |
43 |
Q |
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| T |
34333445 |
ccgggggcaccggttagcaggaccc-ttaaaataat |
34333479 |
T |
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