View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4627-Insertion-3 (Length: 819)

Name: NF4627-Insertion-3
Description: NF4627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4627-Insertion-3
NF4627-Insertion-3
[»] chr8 (17 HSPs)
chr8 (238-819)||(39187829-39188410)
chr8 (9-209)||(39187603-39187803)
chr8 (480-605)||(3160317-3160445)
chr8 (678-753)||(2875793-2875868)
chr8 (480-605)||(2889284-2889412)
chr8 (480-605)||(3145450-3145578)
chr8 (678-753)||(2795862-2795937)
chr8 (691-753)||(3144920-3144982)
chr8 (480-605)||(2874610-2874736)
chr8 (678-753)||(3159501-3159576)
chr8 (663-748)||(4416030-4416116)
chr8 (518-607)||(4416877-4416966)
chr8 (364-456)||(3505269-3505361)
chr8 (716-753)||(2890311-2890348)
chr8 (239-287)||(2889044-2889092)
chr8 (239-287)||(3145770-3145818)
chr8 (480-573)||(2797416-2797511)
[»] chr7 (1 HSPs)
chr7 (364-456)||(43313384-43313475)
[»] chr4 (1 HSPs)
chr4 (364-456)||(34743855-34743946)
[»] chr3 (2 HSPs)
chr3 (364-456)||(21531666-21531757)
chr3 (364-456)||(35167607-35167698)


Alignment Details
Target: chr8 (Bit Score: 570; Significance: 0; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 238 - 819
Target Start/End: Original strand, 39187829 - 39188410
Alignment:
Q  238 gtaaacaagagaattgattttctataagatgagatacagcagccatacctcacaaatttgatttcttcgttcatcattctcatttaatcccctattgcat 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39187829 gtaaacaagagaattgattttctataagatgagatacagcagccatacctcacaaatttgatttcttcgttcatcattctcatttaatcccctattgcat 39187928  T
Q  338 ccatcaattcccagatcaatataaaccttcaagtccttgacatatctcttctcctcatcactgaaggaaatatcattctctatgaactttagagcctgcg 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39187929 ccatcaattcccagatcaatataaaccttcaagtccttgacatatctcttctcctcatcactgaaggaaatatcattctctatgaactttagagcctgcg 39188028  T
Q  438 ttatggtttcagtttaagatacatgatacaacttgccacacaaacaaggtaatgttgtatattatcaaatgatagatattagcgtagaggctccacaatg 537  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39188029 ttatggtttcagtttaagatacatgatacaacttgccacacaaacaaggtaatgttgtatattatcaaatgatagatattagcgtagaggctccacaatg 39188128  T
Q  538 gtggaataacaaaatcaaagaggtaaaccaaagtcaaagactcctaaacaaagcaccatgctcctaaccaactctaacaagatttgcccaatgcttggct 637  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39188129 gtggaataacaaaatcaaagaggtaaaccaaagtcaaagactcctaaacaaagcaccatgctcctaaccaactctaacaagatttgcccaatgcttggct 39188228  T
Q  638 caccatggaccataggcccaagtgtagtgtcctaacgcactgtagtggatgagggtgaaatatatcaatgtaacttggttaccttctcaaatcttttaga 737  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39188229 caccatggaccataggcccaagtgtagtgtcctaacgcactgtagtggatgagggtgaaatatatcaatgtaacttggttaccttctcaaatcttttaga 39188328  T
Q  738 agctcttgcatattcacgacgtcagtgcaatgattcccctttttctttcttcttatgagcagcttctatcttctctttattg 819  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  39188329 agctcttgcatattcacgacgtcggtgcaatgattcccctttttctttcttcttatgagcagcttctcacttctctttattg 39188410  T

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Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 39187603 - 39187803
Alignment:
Q  9 aaacagagagacaaacaaaataaaccatgctctgacttcaacttgacatcatatgcacggtccagaacttgacaacgtattgcatagaagcgagaatgta 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  39187603 aaacagagagacaaacaaaataaaccatgctctgacttcaacttgacatcatatgcacggtccagaacttgacaatgtattgcatagaagcgagaatgta 39187702  T
Q  109 ctacatcatatgcatcgccttaatatccttacgcctgtgtataaattaaaagtaaattcattttacaacaagaagcaactgcttgttcatgtaaaactcg 208  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  39187703 ctacatcatatgcatcgccttaatatccatacgcctgtgtatagattaaaagtaaattcattttacaacaagaagcaactccttgttcatgtaaaactcg 39187802  T
Q  209 g 209  Q
    |    
T  39187803 g 39187803  T

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Target: chr8; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 480 - 605
Target Start/End: Complemental strand, 3160445 - 3160317
Alignment:
Q  480 aacaaggtaatgttgtatatta---tcaaatgatagatattagcgtagaggctccacaatggtggaataacaaaatcaaagaggtaaaccaaagtcaaag 576  Q
    ||||||||||| ||||||||||   |||||||||| |||| || |||||||||| |||| |||||||||||| ||| |||||| ||||||| ||||||||    
T  3160445 aacaaggtaattttgtatattactatcaaatgataaatatgagtgtagaggctctacaagggtggaataacagaatgaaagagataaaccagagtcaaag 3160346  T
Q  577 actcctaaacaaagcaccatgctcctaac 605  Q
    ||||||||| | ||||| |||||||||||    
T  3160345 actcctaaagagagcactatgctcctaac 3160317  T

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Target: chr8; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 678 - 753
Target Start/End: Original strand, 2875793 - 2875868
Alignment:
Q  678 tgtagtggatgagggtgaaatatatcaatgtaacttggttaccttctcaaatcttttagaagctcttgcatattca 753  Q
    |||||||||||| |||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  2875793 tgtagtggatgatggtgaaatatattaatgtaacctggttaccttctgaaatcttttagaagctcttgcatattca 2875868  T

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Target: chr8; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 480 - 605
Target Start/End: Original strand, 2889284 - 2889412
Alignment:
Q  480 aacaaggtaatgttgtatatta---tcaaatgatagatattagcgtagaggctccacaatggtggaataacaaaatcaaagaggtaaaccaaagtcaaag 576  Q
    ||||||||||| ||||||||||   |||||||||| |||| || |||||||||| |||| |||||||||||| ||| ||| || ||||||| ||||||||    
T  2889284 aacaaggtaattttgtatattactatcaaatgataaatatgagtgtagaggctctacaagggtggaataacagaatgaaatagataaaccagagtcaaag 2889383  T
Q  577 actcctaaacaaagcaccatgctcctaac 605  Q
    ||||||||| | ||||| |||||||||||    
T  2889384 actcctaaagagagcactatgctcctaac 2889412  T

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Target: chr8; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 480 - 605
Target Start/End: Complemental strand, 3145578 - 3145450
Alignment:
Q  480 aacaaggtaatgttgtatatta---tcaaatgatagatattagcgtagaggctccacaatggtggaataacaaaatcaaagaggtaaaccaaagtcaaag 576  Q
    ||||||||||| ||||||||||   |||||||||| |||| || |||||||||| |||| |||||||||||| ||| ||| || ||||||| ||||||||    
T  3145578 aacaaggtaattttgtatattactatcaaatgataaatatgagtgtagaggctctacaagggtggaataacagaatgaaatagataaaccagagtcaaag 3145479  T
Q  577 actcctaaacaaagcaccatgctcctaac 605  Q
    ||||||||| | ||||| |||||||||||    
T  3145478 actcctaaagagagcactatgctcctaac 3145450  T

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Target: chr8; HSP #7
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 678 - 753
Target Start/End: Complemental strand, 2795937 - 2795862
Alignment:
Q  678 tgtagtggatgagggtgaaatatatcaatgtaacttggttaccttctcaaatcttttagaagctcttgcatattca 753  Q
    |||||||||||| |||||||||||| |||||||| |||||||||||| | ||||||||||||||||||||||||||    
T  2795937 tgtagtggatgatggtgaaatatattaatgtaacatggttaccttctgatatcttttagaagctcttgcatattca 2795862  T

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Target: chr8; HSP #8
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 691 - 753
Target Start/End: Complemental strand, 3144982 - 3144920
Alignment:
Q  691 ggtgaaatatatcaatgtaacttggttaccttctcaaatcttttagaagctcttgcatattca 753  Q
    |||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  3144982 ggtgaaatatattaatgtaacctggttaccttctgaaatcttttagaagctcttgcatattca 3144920  T

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Target: chr8; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 480 - 605
Target Start/End: Original strand, 2874610 - 2874736
Alignment:
Q  480 aacaaggtaatgttgtatatta---tcaaatgatagatattagcgtagaggctccacaatggtggaataacaaaatcaaagaggtaaaccaaagtcaaag 576  Q
    ||||||||||| ||||||||||   |||||||||| |||| ||||||||||||  |||| |||||||||||| |||   |||| ||||||| ||||||||    
T  2874610 aacaaggtaattttgtatattacgatcaaatgataaatatgagcgtagaggctatacaagggtggaataacagaat--gagagataaaccagagtcaaag 2874707  T
Q  577 actcctaaacaaagcaccatgctcctaac 605  Q
    ||||||||| | ||||| |||||| ||||    
T  2874708 actcctaaagagagcactatgctcataac 2874736  T

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Target: chr8; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 678 - 753
Target Start/End: Complemental strand, 3159576 - 3159501
Alignment:
Q  678 tgtagtggatgagggtgaaatatatcaatgtaacttggttaccttctcaaatcttttagaagctcttgcatattca 753  Q
    |||||||||||| |||||||||||| ||||| || |||||||||||| |||||| || ||||||||||||||||||    
T  3159576 tgtagtggatgatggtgaaatatattaatgttacctggttaccttctgaaatctcttggaagctcttgcatattca 3159501  T

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Target: chr8; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 663 - 748
Target Start/End: Complemental strand, 4416116 - 4416030
Alignment:
Q  663 agtgtcctaacgcactgtagtggatgagggtgaaatatatcaatgtaa-cttggttaccttctcaaatcttttagaagctcttgcat 748  Q
    ||||||||| | || ||||||||||||||||||||||||||||||||| ||  |||||||||  ||||||||||||||| |||||||    
T  4416116 agtgtcctatcacattgtagtggatgagggtgaaatatatcaatgtaacctcagttaccttcataaatcttttagaagcccttgcat 4416030  T

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Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 518 - 607
Target Start/End: Complemental strand, 4416966 - 4416877
Alignment:
Q  518 agcgtagaggctccacaatggtggaataacaaaatcaaagaggtaaaccaaagtcaaagactcctaaacaaagcaccatgctcctaacca 607  Q
    |||| |||||||| |||| | |||||||||||||| |||||| |||||||  ||| |||||||||||||| |||||  | ||||||||||    
T  4416966 agcgcagaggctctacaacgctggaataacaaaatgaaagagataaaccagggtccaagactcctaaacagagcactctactcctaacca 4416877  T

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Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 364 - 456
Target Start/End: Original strand, 3505269 - 3505361
Alignment:
Q  364 cttcaagtccttgacatatctcttctcctcatcactgaaggaaatatcattctctatgaactttagagcctgcgttatggtttcagtttaaga 456  Q
    |||||||||| |||||  | ||||||| | |||||| |||||| |||||| ||||||  |||||| ||||||| |||||||||||||| ||||    
T  3505269 cttcaagtccctgacaactttcttctcatgatcactaaaggaagtatcatcctctatttactttaaagcctgcattatggtttcagttcaaga 3505361  T

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Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 716 - 753
Target Start/End: Original strand, 2890311 - 2890348
Alignment:
Q  716 ttaccttctcaaatcttttagaagctcttgcatattca 753  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  2890311 ttaccttctgaaatcttttagaagctcttgcatattca 2890348  T

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Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 2889044 - 2889092
Alignment:
Q  239 taaacaagagaattgattttctataagatgagatacagcagccatacct 287  Q
    |||||||||||  ||||||||||||||||| || |||||||||||||||    
T  2889044 taaacaagagatgtgattttctataagatgggagacagcagccatacct 2889092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 3145818 - 3145770
Alignment:
Q  239 taaacaagagaattgattttctataagatgagatacagcagccatacct 287  Q
    |||||||||||  ||||||||||||||||| || |||||||||||||||    
T  3145818 taaacaagagatgtgattttctataagatgggagacagcagccatacct 3145770  T

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Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 480 - 573
Target Start/End: Complemental strand, 2797511 - 2797416
Alignment:
Q  480 aacaaggtaatgttgtatatta---tcaaatgatagatattagcgtagaggctccacaatggtggaataacaaaatcaaagaggtaaaccaaagtca 573  Q
    ||||||||||| ||||||||||   |||||||||| |||| |  |||||||||| | || |||||||||||| ||| |||||| ||||||| |||||    
T  2797511 aacaaggtaattttgtatattaccatcaaatgataaatatgaatgtagaggctcta-aagggtggaataacagaatgaaagagataaaccagagtca 2797416  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 364 - 456
Target Start/End: Original strand, 43313384 - 43313475
Alignment:
Q  364 cttcaagtccttgacatatctcttctcctcatcactgaaggaaatatcattctctatgaactttagagcctgcgttatggtttcagtttaaga 456  Q
    |||||||||| |||||| | ||||||| ||||||||||||||| || ||| |||||||| ||||| ||||||| |||| | ||||||||||||    
T  43313384 cttcaagtccctgacatctttcttctcatcatcactgaaggaagtaccatcctctatgatctttacagcctgcattattg-ttcagtttaaga 43313475  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 364 - 456
Target Start/End: Complemental strand, 34743946 - 34743855
Alignment:
Q  364 cttcaagtccttgacatatctcttctcctcatcactgaaggaaatatcattctctatgaactttagagcctgcgttatggtttcagtttaaga 456  Q
    |||||||||| |||||| | ||||||| ||||||||||||||| || ||| |||||||| ||||| ||||||| |||| | ||||||||||||    
T  34743946 cttcaagtccctgacatctttcttctcatcatcactgaaggaagtaccatcctctatgatctttacagcctgcattattg-ttcagtttaaga 34743855  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 364 - 456
Target Start/End: Complemental strand, 21531757 - 21531666
Alignment:
Q  364 cttcaagtccttgacatatctcttctcctcatcactgaaggaaatatcattctctatgaactttagagcctgcgttatggtttcagtttaaga 456  Q
    |||||||||| |||||| | ||||||| ||||||||||||||| || ||| |||||||| ||||| ||||||| |||| | ||||||||||||    
T  21531757 cttcaagtccctgacatctttcttctcatcatcactgaaggaagtaccatcctctatgatctttacagcctgcattattg-ttcagtttaaga 21531666  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 364 - 456
Target Start/End: Complemental strand, 35167698 - 35167607
Alignment:
Q  364 cttcaagtccttgacatatctcttctcctcatcactgaaggaaatatcattctctatgaactttagagcctgcgttatggtttcagtttaaga 456  Q
    |||||||||| |||||| | ||||||| ||||||||||||||| || ||| |||||||| ||||| ||||||| |||| | ||||||||||||    
T  35167698 cttcaagtccctgacatctttcttctcatcatcactgaaggaagtaccatcctctatgatctttacagcctgcattattg-ttcagtttaaga 35167607  T

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