View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4627-Insertion-4 (Length: 728)

Name: NF4627-Insertion-4
Description: NF4627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4627-Insertion-4
NF4627-Insertion-4
[»] chr7 (1 HSPs)
chr7 (8-722)||(48395403-48396127)


Alignment Details
Target: chr7 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 8 - 722
Target Start/End: Original strand, 48395403 - 48396127
Alignment:
Q  8 agttgtacaaatataactcctcttttataaattaattttggtgggcatatttctagcgtggtgacgtctcatgatgtacatgtggggtgggaatgtatta 107  Q
    |||||||||||||| | |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  48395403 agttgtacaaatatcaatcctcttttacaaattaattttggtgggcatatatctagcgtggtgacgtctcatgatgtacacgtggggtgggaatgtatta 48395502  T
Q  108 tctttagtctgtactccgttgcatcattctttcatcatcataacgttagtacgttacttcgtttgttctctcnnnnnnnn-acaacaacaatacacgtgc 206  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||         ||||||||||||||  |||    
T  48395503 tctttagtccgtactccgttgcatcattctttcatcatcataacgtttgtacgttacttcgtttgttctctctctttttttacaacaacaatacaaatgc 48395602  T
Q  207 acttcaaagttagttatacattattaaaacgggagggaaacaatccgacatcatactgcgagagttcttaacagttaacatgattatttactgttcacgt 306  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  48395603 acttcaaagttagttatacataattaaaacgggagggaaacaatccgacatcatactgcgagagttcttaacagttaacatgattatttactattcacgt 48395702  T
Q  307 tgcgaatttgagaggcagctcaaatctatatnnnnnnnttgattttaaaatagaaaacaagtaaatttgttaatacaatcactatttttatgtttgagac 406  Q
    |||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  48395703 tgcgaatttgagaggcagctcaaatctatataaaaaatttgattttaaaatagaaaacaagtaaatttgttaatacaatcactaattttatgtttgagac 48395802  T
Q  407 tccttttaaagaattgtaggtatttatccatcaactagttaaaattagttacgtcgtctatgaatgtataagtggtacccacataccaactattacttca 506  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  48395803 tccttttaaagaattgtaggtatttatctatcaactagttaaaattagttacgtcgtctatgaatgtataagtggtatccacataccaactattacttca 48395902  T
Q  507 tttgtaaatttacctatatgacgggctaaatttgatgggcaacttcatacagttctcgatagtatgttgaattattcnnnnnnnnnnnna---------a 597  Q
    |||||||||||||||||| | |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||            |         |    
T  48395903 tttgtaaatttacctatacggcgggttaaatttgatggacaacttcatacagttctcgatagtatgttgaattattctttttttttaaaaaaaaataata 48396002  T
Q  598 ataagaattgaacttctttttcaatatttaaaacaaacacacaagtggcatgtcaaccaattgtgttggaattaattcaattnnnnnnntgttttgaacc 697  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||    
T  48396003 ataagaattgaacttctttttcaatatttaaaacaaacacacaagtggcatgtcaaccaattgtgttggaattaattcaattaaaaaaatgttttgaacc 48396102  T
Q  698 aatatcaagacaacttttctagtgt 722  Q
    |||||||||||||||||||||||||    
T  48396103 aatatcaagacaacttttctagtgt 48396127  T

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