View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4627-Insertion-5 (Length: 676)
Name: NF4627-Insertion-5
Description: NF4627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4627-Insertion-5 |
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| [»] scaffold0021 (1 HSPs) |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 96; Significance: 1e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 565 - 668
Target Start/End: Original strand, 36644449 - 36644552
Alignment:
| Q |
565 |
ggtgtctactatatataggcgaatgtttcccataatttcaagaacagttggcccgcgatgcagagtcttcctgtcgcgacgcgagttgagatgagagtta |
664 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36644449 |
ggtgtctaatatatataggcgaatgtttcccataatttcaagaacagttggcccgcgatgcagagtcttcctgtcgcgacgcaagttgagatgagagtta |
36644548 |
T |
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| Q |
665 |
atac |
668 |
Q |
| |
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|||| |
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| T |
36644549 |
atac |
36644552 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 478 - 535
Target Start/End: Original strand, 21734309 - 21734366
Alignment:
| Q |
478 |
ttagaccgactctaagcagacgcaattagcgtcggtgtcaggggccgacgcaaaattt |
535 |
Q |
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|||| |||||||||||||||||| ||||||||||||||| |||||||| || |||||| |
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| T |
21734309 |
ttaggccgactctaagcagacgctattagcgtcggtgtcgggggccgatgctaaattt |
21734366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 478 - 535
Target Start/End: Original strand, 21733750 - 21733807
Alignment:
| Q |
478 |
ttagaccgactctaagcagacgcaattagcgtcggtgtcaggggccgacgcaaaattt |
535 |
Q |
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| T |
21733750 |
ttaggccgactctaagcagacgctattagcgtcggtgtcgggggctgatgctaaattt |
21733807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 502 - 564
Target Start/End: Complemental strand, 7145943 - 7145882
Alignment:
| Q |
502 |
attagcgtcggtgtcaggggccgacgcaaaatttggaggctaaattgctgttttcttgtagtg |
564 |
Q |
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| T |
7145943 |
attagtgtcggtgtcaggggccgacgctaaa-atggagggtaaaatgttgttttcttgtagtg |
7145882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 483 - 564
Target Start/End: Complemental strand, 32034888 - 32034807
Alignment:
| Q |
483 |
ccgactctaagcagacgcaattagcgtcggtgtcaggggccgacgcaaaatttggaggctaaattgctgttttcttgtagtg |
564 |
Q |
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| T |
32034888 |
ccgactctaaatagacgctagtagcgtcggtgtcggtggccgacgctaaaattggaggctaaaatgcagttttcttatagtg |
32034807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 502 - 564
Target Start/End: Original strand, 14614825 - 14614886
Alignment:
| Q |
502 |
attagcgtcggtgtcaggggccgacgcaaaatttggaggctaaattgctgttttcttgtagtg |
564 |
Q |
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| T |
14614825 |
attagcgtcggtgtc-ggggccgacgctaaaattggagtctaaaatgctattttcttgtagtg |
14614886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 504 - 544
Target Start/End: Complemental strand, 12840088 - 12840048
Alignment:
| Q |
504 |
tagcgtcggtgtcaggggccgacgcaaaatttggaggctaa |
544 |
Q |
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| T |
12840088 |
tagcgtcggtgtcgggggccgacgctaaaattggaggctaa |
12840048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 483 - 564
Target Start/End: Complemental strand, 3738095 - 3738014
Alignment:
| Q |
483 |
ccgactctaagcagacgcaattagcgtcggtgtcaggggccgacgcaaaatttggaggctaaattgctgttttcttgtagtg |
564 |
Q |
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| T |
3738095 |
ccgactctaaccggacgctactagcgtcggtgtcggcggccgacactaaaattggaggctaaaatgcagttttcttgtagtg |
3738014 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 483 - 564
Target Start/End: Complemental strand, 20304610 - 20304529
Alignment:
| Q |
483 |
ccgactctaagcagacgcaattagcgtcggtgtcaggggccgacgcaaaatttggaggctaaattgctgttttcttgtagtg |
564 |
Q |
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| T |
20304610 |
ccgactctaagcagacgctattagcgtcggtgtcgggagtcgacgctaaaatttgaagcaaaaatgctattttcttgtagtg |
20304529 |
T |
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Target: scaffold0021 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 496 - 564
Target Start/End: Original strand, 4962 - 5030
Alignment:
| Q |
496 |
gacgcaattagcgtcggtgtcaggggccgacgcaaaatttggaggctaaattgctgttttcttgtagtg |
564 |
Q |
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| T |
4962 |
gacgctattagcgtcggtgtcgggggccgacgctaaagtttgactctaaaaagctgttttcttgtagtg |
5030 |
T |
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Target: scaffold0012 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 559
Target Start/End: Complemental strand, 144089 - 144012
Alignment:
| Q |
482 |
accgactctaagcagacgcaattagcgtcggtgtcaggggccgacgcaaaatttggaggctaaattgctgttttcttg |
559 |
Q |
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| T |
144089 |
accgactctaatccgactctagtagcgtcggtgtcggggaccgacactaaaattggaggttaaaatgctgttttcttg |
144012 |
T |
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