View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4627-Insertion-6 (Length: 637)

Name: NF4627-Insertion-6
Description: NF4627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4627-Insertion-6
NF4627-Insertion-6
[»] chr1 (1 HSPs)
chr1 (7-637)||(52515488-52516122)


Alignment Details
Target: chr1 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 7 - 637
Target Start/End: Original strand, 52515488 - 52516122
Alignment:
Q  7 atgctggcagcacaggattttgtggagcttgataaagtacgcctttgagtttctccgaaccaattgtgacagtaactagataaccactatcaaatttccc 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  52515488 atgctggcagcacaggattttgtggagcttgataaagtacgcctttgagtttctccgaaccaattgtgacagtaactagatagccactatcaaatttccc 52515587  T
Q  107 atcaatgaccccgacaacctgagatcctgccgaagatgatcccattgctgagagcacaagagaataaacaatactagttattatgttatcaataacagta 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52515588 atcaatgaccccgacaacctgagatcctgccgaagatgatcccattgctgagagcacaagagaataaacaatactagttattatgttatcaataacagta 52515687  T
Q  207 agaggagttataggtatttgcatttctgatgagttgtnnnnnnnnnnn----catacataagattaggtcccacttccaaaaaagaaagaatggttaaca 302  Q
    |||| ||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52515688 agagaagttataggtatttgcatttctgatgagttgtaaaaaaaaaaaaaaacatacataagattaggtcccacttccaaaaaagaaagaatggttaaca 52515787  T
Q  303 aggaaaaacaaagtttaaaccaacatatatcaaaccctataccactaggtggggttgactgcaagaatcaaacagtactataattcgcaatcctatatta 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  52515788 aggaaaaacaaagtttaaaccaacatatatcaaaccctataccactaggtggggttgactgcaagaatcaaacagcactataattcgcaatcctatatta 52515887  T
Q  403 agtttaaaggtagaacgtttatcactaaatctctccgtactagtttggcttacttttgtcaccctgactattggaatatcctttatctggtcaactctcg 502  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  52515888 agtttaaaggtagaacgtttatcactaaatctctccgtactagtttggcttacttttgtcaccctgactaatggaatatcctttatctggtcaactctcg 52515987  T
Q  503 ttactagtacttacatgatgtcaaacaaacttgttactagtacttgtacgttgtcaaacaaactgatattagacaatcttttctacaattgaagctgccc 602  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  52515988 ttactagtacttacatgatgtcaaacaaacttgttactagtacttacacgttgtcaaacaaactgatatttgacaatcttttctacaattgaagctgccc 52516087  T
Q  603 caattttcattctagtacttttattcctagtacta 637  Q
    |||||||||||||||||||||||||||||||||||    
T  52516088 caattttcattctagtacttttattcctagtacta 52516122  T

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