View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4627-Insertion-7 (Length: 565)
Name: NF4627-Insertion-7
Description: NF4627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4627-Insertion-7 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 8 - 428
Target Start/End: Complemental strand, 53635719 - 53635295
Alignment:
| Q |
8 |
aaaaccacatttttctagctcataattgtggacgaattctcctgaagttccgttctagatcttcttcttcttct------gcaaaaagacaaaatcagag |
101 |
Q |
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| T |
53635719 |
aaaaccacatttttctagctcataattgtggacgaattctcctgaagttt-gttctagatcttcttcttcttcttcttctgcaaaaagacaaaatcagag |
53635621 |
T |
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| Q |
102 |
tacaaaacatcacatggtggatacatatagaataatgtaaaaagggagcaaggctttatcccctagaacataacatgtcctttcgtccctgtttagaagt |
201 |
Q |
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| T |
53635620 |
tacaaaacatcacacggtggatacatatagaataatgtaaaaagggagcaaggctttatcccctagaacataacatgtcctttcgtccctgtttagaagt |
53635521 |
T |
|
| Q |
202 |
atactccaaaaatatgtgaaacgttgtagaattcagatggtgaaataca----ctcaataacaaatgatgtttgatttgtctaatgtgtgcacaagtaaa |
297 |
Q |
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| T |
53635520 |
atactccaaaaatatgtgaatcgttgtagaattcagatggtgaaatacactcactcaataacaaatgatgtttgattt-----atgtgtgcacaagtaaa |
53635426 |
T |
|
| Q |
298 |
taagtcacactgtgcataaatatatttttatcattatatcaatcaataagtcacatttgatcagggacagactcagaagtttccagtagtgacggcaata |
397 |
Q |
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| T |
53635425 |
taagtcacattgtgcataaatatatttttatcattatatcaatcaataagtcacatttgatcagagacagactcagaagtttccagtagtgacggcaata |
53635326 |
T |
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| Q |
398 |
tacatataattaaaaagcattaaatgtattt |
428 |
Q |
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| T |
53635325 |
tatatataattaaaaagcattaaatgtattt |
53635295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 358 - 446
Target Start/End: Complemental strand, 53633612 - 53633525
Alignment:
| Q |
358 |
tcagggacagactcagaagtttccagtagtgacggcaatatacatataattaaaaagcattaaatgtatttcttacaaaaacataaata |
446 |
Q |
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| T |
53633612 |
tcagggacagacccagaagtttcgactagtgaaggcaatatacatataattaagaagtattaaatgaattt-ttttaaaaacataaata |
53633525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 471
Target Start/End: Complemental strand, 53635281 - 53635227
Alignment:
| Q |
416 |
attaaatgtatttcttacaaaaacataaatattcataatttttggttgttgtgtgc |
471 |
Q |
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| T |
53635281 |
attaaatgtatttcttac-aaaacataaatatacatcatagttggttgttgtgtgc |
53635227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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