View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4627-Insertion-8 (Length: 508)
Name: NF4627-Insertion-8
Description: NF4627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4627-Insertion-8 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 256 - 508
Target Start/End: Original strand, 37493105 - 37493355
Alignment:
| Q |
256 |
ggtctagaccctcgttactatccgagccgggtggacgcacataaggcggcaaaacttttccagtgtgcctatgttttccattcacaagactcgaacatga |
355 |
Q |
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| T |
37493105 |
ggtctagaccctcgttactctccgagccgggtggacgcacataaggcggcaaaacttttccagtgtgcctatgttttccattcacaagactcgaacatga |
37493204 |
T |
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| Q |
356 |
gactgcgtaaagagattcatgctcattgcctcatcgacccacataagttttaaatttaagatagcacaccaatgatcggcatataatt--tgtgttttat |
453 |
Q |
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| T |
37493205 |
gactgcgtaaagagattcatgctcactgcctcatcg----acataagttttaaatttaagatagcacaccaatgatcggcatataatttgtgtgttttat |
37493300 |
T |
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| Q |
454 |
tattccgtcatttcaaaatatttatcgttccatgtacttgcaaacatattcatag |
508 |
Q |
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| T |
37493301 |
tattccgtcatttcaaaatatttatcgttccatgtactttcaaacatattcatag |
37493355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 197
Target Start/End: Original strand, 37492857 - 37493046
Alignment:
| Q |
8 |
aaaagaatggtttcgttggtttggcgaatgacaagttgggcgaaggagatacgtgtgtcaaatatgaaccttggattgaaaattctcctattattccatc |
107 |
Q |
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| T |
37492857 |
aaaagaatggtttcgttggtttggcgaatgacaagttgggcgaaggagatacgtgtgtcaaatatgaaccttggattgaaaattctcctattattccatc |
37492956 |
T |
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| Q |
108 |
aaattcaaactgcacacaatactacaaagatcaaccatttttatttaatcaagactcaaaccaacagaaggttttgatttcgttctaatc |
197 |
Q |
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| T |
37492957 |
aaattcaaactgcacacaatactacaaagatcaaccatttttatttaatcaagactcaaaccaacagaaggttttgatttcgttctaatc |
37493046 |
T |
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