View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4627-Insertion-9 (Length: 355)
Name: NF4627-Insertion-9
Description: NF4627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4627-Insertion-9 |
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| [»] scaffold1432 (1 HSPs) |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: scaffold1432 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: scaffold1432
Description:
Target: scaffold1432; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 8 - 355
Target Start/End: Complemental strand, 1765 - 1419
Alignment:
| Q |
8 |
atcacatcttaac-aaaagtgcatatatatggtgttcacttggttacgtactctctcagtcaaatttaatactctccctatcaaattaaatgtcttttaa |
106 |
Q |
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||||||||||| | |||||||||||||||||| || || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1765 |
atcacatcttagctaaaagtgcatatatatggcgtgcattctgttacgtactctctcagtcaaatttaatactctccctatcaaattaaatgtcttttaa |
1666 |
T |
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| Q |
107 |
ctctttataaaatatctctgcattgttggtgaatttatgatttccttgttattttgctttgctttattttagtagtttgtatcgggtgtgtttggtattt |
206 |
Q |
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| T |
1665 |
ctctttataaaatatctctgcatttttggtgaatttatgatttccttgttattttgctttgctttattttagtagtttgtatcgggtgtgtttggtattt |
1566 |
T |
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| Q |
207 |
gaaagtgacttggtttagtagtacagtattttgagtaattggattatagcggctttagctaaattcagcatcctcaattggccttacaagtaaaatttct |
306 |
Q |
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| T |
1565 |
gaaagtgacttggtttagtagtacagtattttgagtaattggattatagcggctttagctaaattcagcatcctc--ttggccttacaagtaaaatttca |
1468 |
T |
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| Q |
307 |
aacaataaaaataaccgaaccctatcctttctcaatctctgctcttcca |
355 |
Q |
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| T |
1467 |
aacaataaaaataaccgaaccctatcctctctcaatctctgctcttcca |
1419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 127 - 355
Target Start/End: Original strand, 21733 - 21954
Alignment:
| Q |
127 |
cattgttggtgaatttatgatttccttgttattttgctttgctttattttagtagtttgtatcgggtgtgtttggtatttgaaagtgacttggtttagta |
226 |
Q |
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| T |
21733 |
cattgttggtgattttatgatttccttgttattttgctttgctttattttagtagtttgtatcgggtgtgtttggtatttgaaagtgatttggtttact- |
21831 |
T |
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| Q |
227 |
gtacagtattttgagtaattggattatagcggctttagctaaattcagcatcctcaattggccttacaagtaaaatttctaacaataaaaataaccgaac |
326 |
Q |
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| T |
21832 |
----agtattttgagtaattggattatagcggctttagctaaattcaccatcctc--ttggccttacaagtaaaatttcaaacaataaaaataactgaac |
21925 |
T |
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| Q |
327 |
cctatcctttctcaatctctgctcttcca |
355 |
Q |
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| T |
21926 |
cctagtctttctcaatctctgatcttcca |
21954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 25269842 - 25269746
Alignment:
| Q |
8 |
atcacatcttaac-aaaagtgcatatatatggtgttcacttggttacgtactctctcagtcaaatttaatactctccctatcaaattaaatgtcttt |
103 |
Q |
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||||||||||| | |||||||||||||||||| || || || |||||||||||| ||||||| |||||||| |||| |||||||||||||||||||| |
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| T |
25269842 |
atcacatcttagctaaaagtgcatatatatggcgtgcattttgttacgtactctttcagtcatatttaatattctctctatcaaattaaatgtcttt |
25269746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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