View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4627_high_10 (Length: 416)
Name: NF4627_high_10
Description: NF4627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4627_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 18 - 404
Target Start/End: Original strand, 1522040 - 1522426
Alignment:
| Q |
18 |
agccacaacttatctgactatatacacacacacatacatatatatgagtcgttatgaaggattaattgggaatgtttgcatgttgagtttggttggatta |
117 |
Q |
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| T |
1522040 |
agccacaacttatctgactatatacacacacacatacatatatatgagtcgttatgaaggattaattgggaatgtttgcatgttgagtttggttggatta |
1522139 |
T |
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| Q |
118 |
aggatgagaaatggtggatttaaggagaggagagtggctgagtgggaagaagagtgtacgagggagttttatttcagcttggtgagtgagaaaaatgata |
217 |
Q |
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| T |
1522140 |
aggatgagaaatggtggatttaaggagaggagagtggctgagtgagaagaagagtgtacgagggagttttatttcagcttggtgagtgagaaaaatgata |
1522239 |
T |
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| Q |
218 |
aaagaatgagagatgagtgtgtttttaggcttatatacttatgcagaaactaccaccttacctctctgtaaacaacattatcaggcacgattacaatcaa |
317 |
Q |
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| T |
1522240 |
aaagaatgagagatgagtgtgtttttaggcttatatacttatgcagaaactaccaccttacctctctgtaaacaacattatcaggcacgattacaatcaa |
1522339 |
T |
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| Q |
318 |
tattgtagtgtgataaacattatacgggatgttacactttattcccttaagaataagcgtggatagtttatttgcacttccgacctt |
404 |
Q |
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| T |
1522340 |
tattgtagtgtgataaacattatacgggatgttacactttattcccttaagaataagcgtggatagtttatttgcacttccgacctt |
1522426 |
T |
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