View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4627_high_21 (Length: 272)
Name: NF4627_high_21
Description: NF4627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4627_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 6e-77; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 42 - 250
Target Start/End: Complemental strand, 27076014 - 27075788
Alignment:
| Q |
42 |
gtaatgaaatgaagagcaagtaaaatggttttacctcttaaggaataaagagtgaagttgtgaggaaaaga-----aaggtatgacaaatgaaaaagtct |
136 |
Q |
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| T |
27076014 |
gtaatgaaatgaagatcaagtaaaatggttttacctcttaaggaataaagagtgaagttgtgaggaaaagaaggtgaaggtaagacaaatgaaaaagtct |
27075915 |
T |
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| Q |
137 |
caaaacaaaagtgtggga-----------agtggatgaggaagagtctcacaaacaatagagtgatgcaac--gtgtgtgcgctcatgaaaagtagaggg |
223 |
Q |
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| T |
27075914 |
caaaacaaaagtgtgggaagttaatgaatagtggatgaggaagagtctcacaaacaatagagtgatgcaacgtgtgtgtgcgctcatgaaaagtagaggg |
27075815 |
T |
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| Q |
224 |
aaaaaaactgtatacgcgcccaatgta |
250 |
Q |
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|||||||||||||||| |||||||||| |
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| T |
27075814 |
aaaaaaactgtatacgtgcccaatgta |
27075788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 42 - 250
Target Start/End: Complemental strand, 27156111 - 27155885
Alignment:
| Q |
42 |
gtaatgaaatgaagagcaagtaaaatggttttacctcttaaggaataaagagtgaagttgtgaggaaaaga-----aaggtatgacaaatgaaaaagtct |
136 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
27156111 |
gtaatgaaatgaagatcaagtaaaatggttttacctcttaaggaataaagagtgaagttgtgaggaaaagaaggtgaaggtaagacaaatgaaaaagtct |
27156012 |
T |
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| Q |
137 |
caaaacaaaagtgtggga-----------agtggatgaggaagagtctcacaaacaatagagtgatgcaac--gtgtgtgcgctcatgaaaagtagaggg |
223 |
Q |
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| T |
27156011 |
caaaacaaaagtgtgggaagttaatgaatagtggatgaggaagagtctcacaaacaatagagtgatgcaacgtgtgtgtgcgctcatgaaaagtagaggg |
27155912 |
T |
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| Q |
224 |
aaaaaaactgtatacgcgcccaatgta |
250 |
Q |
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| T |
27155911 |
aaaaaaactgtatacgtgcccaatgta |
27155885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 42 - 250
Target Start/End: Original strand, 27166820 - 27167046
Alignment:
| Q |
42 |
gtaatgaaatgaagagcaagtaaaatggttttacctcttaaggaataaagagtgaagttgtgaggaaaaga-----aaggtatgacaaatgaaaaagtct |
136 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
27166820 |
gtaatgaaatgaagatcaagtaaaatggttttacctcttaaggaataaagagtgaagttgtgaggaaaagaaggtgaaggtaagacaaatgaaaaagtct |
27166919 |
T |
|
| Q |
137 |
caaaacaaaagtgtggga-----------agtggatgaggaagagtctcacaaacaatagagtgatgcaac--gtgtgtgcgctcatgaaaagtagaggg |
223 |
Q |
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| T |
27166920 |
caaaacaaaagtgtgggaagttaatgaatagtggatgaggaagagtctcacaaacaatagagtgatgcaacgtgtgtgtgcgctcatgaaaagtagaggg |
27167019 |
T |
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| Q |
224 |
aaaaaaactgtatacgcgcccaatgta |
250 |
Q |
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|||||||||||||||| |||||||||| |
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| T |
27167020 |
aaaaaaactgtatacgtgcccaatgta |
27167046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 1284571 - 1284638
Alignment:
| Q |
42 |
gtaatgaaatgaagagcaagtaaaatggttttacctcttaaggaataaagagtgaagttgtgaggaaa |
109 |
Q |
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||||||||||||||| ||||||||||||||||||||||| || || |||||||||||||||||||||| |
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| T |
1284571 |
gtaatgaaatgaagatcaagtaaaatggttttacctcttcagaaacaaagagtgaagttgtgaggaaa |
1284638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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