View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4627_high_24 (Length: 252)
Name: NF4627_high_24
Description: NF4627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4627_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 30715519 - 30715281
Alignment:
| Q |
1 |
caatgtgtgcttcttgtgagaaagatggtttaccatgtggtgcattggacaaggattcagaaacatcatcgtcatcgtcatcattgtcttcttcctcttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30715519 |
caatgtgtgcttcttgtgagaaagatggtttaccatgtggtgcattggacaaggattcagaaacatcatcgtcatcgtcatcattgtcttcttcctcttc |
30715420 |
T |
|
| Q |
101 |
ttcggtttcatcttcaaattgtcggtgttgatcctcttgagatttagaatccacatcgtttgcatcagtactattattatcgttgtcctcgtctttgtat |
200 |
Q |
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|
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30715419 |
ttcggtttcatcttcaaactgtcggtgttgatcctcttgagattcagaatccacatcgtctgcatcagtactattattatcgttgtcctcgtctttgtat |
30715320 |
T |
|
| Q |
201 |
tcttctgataacttttgttttggaattctatgatgatgt |
239 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||| |
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| T |
30715319 |
tcttctgataacttttgttttggaattctattatgatgt |
30715281 |
T |
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