View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4627_high_30 (Length: 238)
Name: NF4627_high_30
Description: NF4627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4627_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 34745779 - 34745993
Alignment:
| Q |
11 |
attattctggatgaggatgcaccacatacatttctgcaaaataagttacagttcttcaaaccttaaactaggagcgcttagattatttgttcttcactac |
110 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34745779 |
attattatggatgaggatgcaccacatacatttctgcaaaataagttacagttcttcaaaccttaaactaggagcgcttagattatttgttcttcactac |
34745878 |
T |
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| Q |
111 |
--gttgttgttgttaaatagtgtcgccaccattaccaatactgtcaaaactaggctcctcggaaatggtgtggctattagccatagatgttggaacgtca |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34745879 |
aggttgttgttgttaaatagtgtcgccaccattaccaataccgtcaaaactaggctcctcggaaatggtgtggctattagccatagatgttggaacgtca |
34745978 |
T |
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| Q |
209 |
tgattatgtcttcct |
223 |
Q |
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||||||||||||||| |
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| T |
34745979 |
tgattatgtcttcct |
34745993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 34734984 - 34735100
Alignment:
| Q |
22 |
tgaggatgcaccacatacatttctgcaaaataagttacagttcttcaaaccttaaactag-gag-cgcttagattatttgttcttcactac--gttgttg |
117 |
Q |
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|||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||| ||||||| |
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| T |
34734984 |
tgaggatgcaccacatgcatttgtgcaaaataagttacagttcttcaaaccataaactagctagtagcttagattatttgttcttcactacaggttgttg |
34735083 |
T |
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| Q |
118 |
ttgttaaatagtgtcgc |
134 |
Q |
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||||||||| |||||| |
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| T |
34735084 |
ctgttaaatattgtcgc |
34735100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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