View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4627_high_34 (Length: 204)
Name: NF4627_high_34
Description: NF4627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4627_high_34 |
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Alignment Details
Target: chr6 (Bit Score: 174; Significance: 8e-94; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 24254272 - 24254461
Alignment:
| Q |
1 |
gctctactctattatctttcaaatgatagagaattgctttctgatatcgagaaaccagtattagtatgtcaccattctcagaaagacacaatgggaacat |
100 |
Q |
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| T |
24254272 |
gctctactctattatctttcaaatgatagagaattgctttgtgatattgagaaatcagtattagtatgtcaccattctcagaaagacacaatgggaacat |
24254371 |
T |
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| Q |
101 |
aaacgattgataacgattccagtcaataaacctatcatctacttgaacattctcaaaactgattttgatgaattgagtccaagattgttc |
190 |
Q |
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| T |
24254372 |
aaacgattgataacgattccagtcactaaacctatcatctacttgaacattctcaaaactgattttgatgaattgagtccaagattgttc |
24254461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 6942804 - 6942836
Alignment:
| Q |
7 |
ctctattatctttcaaatgatagagaattgctt |
39 |
Q |
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| T |
6942804 |
ctctattatctttcaaattatagagaattgctt |
6942836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 19325828 - 19326021
Alignment:
| Q |
1 |
gctctactctattatctttcaaatgatagagaattgctttctgatatcgagaaaccagtattagtatgtcaccattctcagaaagacacaatgggaacat |
100 |
Q |
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| T |
19325828 |
gctctactctattatctttcaaatgatatagtattgcttttggagaactg---accaatactagtgtatcactattctcagaaagacacaatgggaacat |
19325924 |
T |
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| Q |
101 |
aaacgattgataacgattccagtc----aa--taaacctatcatctacttgaacattctcaaaactgattttgatgaattgagtccaagattgttct |
191 |
Q |
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| T |
19325925 |
aagcgattgataatgaaaccagtcgctaaacctaaacctatcatctacttgaacattctgaaaactgattttgatgaattgagtccaagattgttct |
19326021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 190
Target Start/End: Original strand, 19344489 - 19344610
Alignment:
| Q |
69 |
tcaccattctcagaaagacacaatgggaacataaacgattgataacgattccagtcaataaacctatcatctacttgaacattctcaaaactgattttga |
168 |
Q |
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|||||||| | |||||| |||||||| |||||||| || || || | ||| |||| ||||||||||||| || ||| ||||| |||||| ||||| | |
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| T |
19344489 |
tcaccatttttagaaagccacaatggaaacataaaatatggacaataaatccggtcactaaacctatcatcccctagaagattctgaaaactaattttaa |
19344588 |
T |
|
| Q |
169 |
tgaattgagtccaagattgttc |
190 |
Q |
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| T |
19344589 |
gaaattgagtccaagattgttc |
19344610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 69 - 184
Target Start/End: Complemental strand, 19374912 - 19374797
Alignment:
| Q |
69 |
tcaccattctcagaaagacacaatgggaacataaacgattgataacgattccagtcaataaacctatcatctacttgaacattctcaaaactgattttga |
168 |
Q |
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|||||||| | |||||| |||||||| |||||||| |||||||| | ||| |||| ||||||||||||| ||| || ||||| ||||| ||||| | |
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| T |
19374912 |
tcaccatttttagaaagccacaatggaaacataaaacattgataataaatccggtcactaaacctatcatccactaaaagattctttaaactaattttaa |
19374813 |
T |
|
| Q |
169 |
tgaattgagtccaaga |
184 |
Q |
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|||||||||||||| |
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| T |
19374812 |
gaaattgagtccaaga |
19374797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 5e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 69 - 190
Target Start/End: Complemental strand, 53790709 - 53790588
Alignment:
| Q |
69 |
tcaccattctcagaaagacacaatgggaacataaacgattgataacgattccagtcaataaacctatcatctacttgaacattctcaaaactgattttga |
168 |
Q |
| |
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||||||||||||||||||||||||||||||||||| | ||||| ||||||||||| |||| ||| ||||||||||| ||||| |||||| ||||| | |
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| T |
53790709 |
tcaccattctcagaaagacacaatgggaacataaatgtctgatactgattccagtcactaaaattattatctacttgaagattctgaaaactaattttaa |
53790610 |
T |
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| Q |
169 |
tgaattgagtccaagattgttc |
190 |
Q |
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|||||||||||||||||||| |
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| T |
53790609 |
gaaattgagtccaagattgttc |
53790588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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