View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4627_high_4 (Length: 454)

Name: NF4627_high_4
Description: NF4627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4627_high_4
NF4627_high_4
[»] chr5 (9 HSPs)
chr5 (19-232)||(15188015-15188225)
chr5 (319-399)||(15188238-15188318)
chr5 (37-185)||(19215349-19215500)
chr5 (319-401)||(36868563-36868645)
chr5 (352-401)||(788022-788071)
chr5 (37-117)||(788345-788428)
chr5 (349-401)||(19215708-19215760)
chr5 (37-145)||(36868259-36868370)
chr5 (326-401)||(32278451-32278525)
[»] chr1 (13 HSPs)
chr1 (18-401)||(19393908-19394299)
chr1 (91-399)||(39332358-39332677)
chr1 (19-158)||(17114743-17114885)
chr1 (333-401)||(3374558-3374626)
chr1 (319-401)||(41034786-41034868)
chr1 (23-147)||(41035065-41035192)
chr1 (315-401)||(17114466-17114551)
chr1 (313-401)||(29061290-29061376)
chr1 (37-168)||(49491899-49492032)
chr1 (37-144)||(50903525-50903635)
chr1 (41-139)||(13062010-13062111)
chr1 (326-391)||(44163512-44163576)
chr1 (75-145)||(3374311-3374381)
[»] chr7 (5 HSPs)
chr7 (19-401)||(33191227-33191626)
chr7 (326-401)||(19407635-19407710)
chr7 (326-398)||(7543850-7543922)
chr7 (70-158)||(19407872-19407960)
chr7 (349-401)||(39498220-39498272)
[»] chr8 (14 HSPs)
chr8 (19-145)||(8831264-8831393)
chr8 (23-145)||(27786829-27786954)
chr8 (23-145)||(36206462-36206587)
chr8 (352-401)||(3072281-3072330)
chr8 (349-401)||(399511-399563)
chr8 (352-401)||(8831017-8831066)
chr8 (37-145)||(29369070-29369181)
chr8 (316-401)||(29369370-29369455)
chr8 (355-401)||(14295245-14295291)
chr8 (319-401)||(27786554-27786636)
chr8 (19-115)||(399792-399891)
chr8 (39-133)||(28225767-28225864)
chr8 (350-399)||(36206249-36206298)
chr8 (349-401)||(3801292-3801344)
[»] chr4 (11 HSPs)
chr4 (19-145)||(24239885-24240011)
chr4 (39-145)||(16593811-16593920)
chr4 (37-158)||(37049967-37050092)
chr4 (349-401)||(19852785-19852836)
chr4 (39-145)||(19852453-19852562)
chr4 (326-401)||(37050306-37050380)
chr4 (349-401)||(16593537-16593588)
chr4 (342-401)||(18522040-18522099)
chr4 (350-401)||(7500378-7500429)
chr4 (20-138)||(16832189-16832310)
chr4 (316-401)||(7492293-7492378)
[»] chr6 (8 HSPs)
chr6 (18-168)||(4263388-4263538)
chr6 (19-145)||(10989973-10990102)
chr6 (37-158)||(25167810-25167934)
chr6 (326-401)||(3949640-3949714)
chr6 (326-400)||(25168148-25168221)
chr6 (326-401)||(2606611-2606685)
chr6 (319-401)||(10990286-10990368)
chr6 (349-401)||(13535386-13535437)
[»] chr3 (15 HSPs)
chr3 (18-168)||(21844910-21845063)
chr3 (26-145)||(16893033-16893155)
chr3 (349-401)||(18028331-18028383)
chr3 (27-145)||(51524824-51524945)
chr3 (326-398)||(29347102-29347174)
chr3 (39-145)||(31067144-31067254)
chr3 (316-398)||(51525125-51525207)
chr3 (344-401)||(3367243-3367300)
chr3 (37-145)||(35526603-35526718)
chr3 (19-83)||(26796927-26796991)
chr3 (350-401)||(21844701-21844752)
chr3 (339-401)||(26796582-26796643)
chr3 (349-401)||(35526303-35526354)
chr3 (70-145)||(29346801-29346876)
chr3 (41-83)||(29346763-29346805)
[»] chr2 (11 HSPs)
chr2 (18-145)||(18693052-18693179)
chr2 (349-401)||(18811481-18811533)
chr2 (31-185)||(14296260-14296417)
chr2 (349-401)||(13502884-13502936)
chr2 (27-145)||(18811747-18811868)
chr2 (37-158)||(31092283-31092407)
chr2 (319-401)||(30180089-30180171)
chr2 (37-145)||(37344586-37344697)
chr2 (41-145)||(13502653-13502760)
chr2 (352-401)||(31092619-31092668)
chr2 (352-401)||(45513477-45513526)
[»] scaffold0531 (2 HSPs)
scaffold0531 (19-145)||(10208-10337)
scaffold0531 (349-401)||(10560-10611)


Alignment Details
Target: chr5 (Bit Score: 156; Significance: 1e-82; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 15188015 - 15188225
Alignment:
Q  19 tatcagactttgagcagtactatccaagtctatatgagagcactaatgcagagaaaaagaagaagcatatgagcaaagtgaagcctgctagctttaactt 118  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  15188015 tatcagactttgagcagcactatccaagcctatatgagagcactaatgcagagaaaaagaagaagcatatgagcaaagtgaagcctgatagctttaactc 15188114  T
Q  119 agctagaatgaggacccgtgcccaaaaagctaccttcaaaattgacttggtagctacattatagttgcattataataatagatagaaatgtcaattattg 218  Q
    ||||||||||||||||||||||||||  |||||| | |||||||||||||||||||||| |||||||||||   | ||||| ||||||||||||||||||    
T  15188115 agctagaatgaggacccgtgcccaaatggctaccattaaaattgacttggtagctacataatagttgcatt---agaatagctagaaatgtcaattattg 15188211  T
Q  219 tgtacaatttttca 232  Q
    ||||||||||||||    
T  15188212 tgtacaatttttca 15188225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 319 - 399
Target Start/End: Original strand, 15188238 - 15188318
Alignment:
Q  319 ttttctcttcataggttcttcactatgtggctctgttgtattggttcaggcatctcttgtcttttatattttagtgctttg 399  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  15188238 ttttctcttcataggttcttcactatgtgactctgttgtattcgttcaggcatctcttgtcttttatattttagtgctttg 15188318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 37 - 185
Target Start/End: Original strand, 19215349 - 19215500
Alignment:
Q  37 actatccaagtctatatgagagcactaatgcagagaaaa---agaagaagcatatgagcaaagtgaagcctgctagctttaacttagctagaatgaggac 133  Q
    |||||||||| |||| ||||||||||||  |||||| ||   ||||||||||  ||| |||||||| |||  |||||||||||| |||  ||||||||||    
T  19215349 actatccaagcctatttgagagcactaagacagagagaatgaagaagaagcaggtgaacaaagtgatgccgtctagctttaactcagcccgaatgaggac 19215448  T
Q  134 ccgtgcccaaaaagctaccttcaaaattgacttggtagctacattatagttg 185  Q
    ||| |||||||| | ||||||||||| || ||||| || ||||  |||||||    
T  19215449 ccgagcccaaaagggtaccttcaaaactgccttggcagatacagaatagttg 19215500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 401
Target Start/End: Original strand, 36868563 - 36868645
Alignment:
Q  319 ttttctcttcataggttcttcactatgtggctctgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    |||||| |||||||||  | |||  |||| || |||||||||||||||||| |||| | ||||||||||||||||| ||||||    
T  36868563 ttttcttttcataggtcttacacattgtgactgtgttgtattggttcaggcctctcctatcttttatattttagtgttttgat 36868645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 788071 - 788022
Alignment:
Q  352 tgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    |||||||||||||||||| |||| |||||||||||||||| || ||||||    
T  788071 tgttgtattggttcaggcttctcctgtcttttatattttattgttttgat 788022  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 788428 - 788345
Alignment:
Q  37 actatccaagtctatatgagagcactaatgcagag---aaaaagaagaagcatatgagcaaagtgaagcctgctagctttaact 117  Q
    ||||||||||||||| |||||||| ||| ||||||   || ||||||||||| |||| |||| |||||||| ||| ||||||||    
T  788428 actatccaagtctatttgagagcattaaggcagagagaaagaagaagaagcagatgaacaaaatgaagccttctaactttaact 788345  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 401
Target Start/End: Original strand, 19215708 - 19215760
Alignment:
Q  349 ctctgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    ||||||||||||||||||||| |||| | |||||||||||||| | |||||||    
T  19215708 ctctgttgtattggttcaggcctctcctatcttttatattttattactttgat 19215760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 145
Target Start/End: Original strand, 36868259 - 36868370
Alignment:
Q  37 actatccaagtctatatgagagcactaa--tgcagagaaa-aagaagaagcatatgagcaaagtgaagcctgctagctttaacttagctagaatgaggac 133  Q
    |||||||||||  || |||||||| |||  || ||||||| |||||||||||  |||  |||||||||||| |||||||||||| |||  |||||||| |    
T  36868259 actatccaagttaatctgagagcaataaggtggagagaaagaagaagaagcaagtgaataaagtgaagccttctagctttaactcagccggaatgagggc 36868358  T
Q  134 ccgtgcccaaaa 145  Q
    ||||| ||||||    
T  36868359 ccgtgtccaaaa 36868370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 401
Target Start/End: Complemental strand, 32278525 - 32278451
Alignment:
Q  326 ttcataggttcttcactatgtggctctgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    |||||||||| | ||||||||| ||||| ||||||||||||||| |||  || ||||||||||||| ||| |||||    
T  32278525 ttcataggttttacactatgtgactctgatgtattggttcaggcctcttctg-cttttatattttattgccttgat 32278451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 401
Target Start/End: Complemental strand, 19394299 - 19393908
Alignment:
Q  18 gtatcagactttgagcagtactatccaagtctatatgagagcactaatgcagagaaaaagaagaag---catatgagcaaagtgaagcctgctagcttta 114  Q
    |||||||||||||||||| |||||||||| ||||  ||||||||||| ||||||||||||||||||   ||| ||||||||||||||||| || ||||||    
T  19394299 gtatcagactttgagcagcactatccaagcctatcggagagcactaaagcagagaaaaagaagaagaagcatgtgagcaaagtgaagccttcttgcttta 19394200  T
Q  115 acttagctagaatgaggacccgtgcccaaaaagctaccttcaaaattgacttggtagctacattata----gttgcattataataatagatagaaatgtc 210  Q
    |||||||| |||||||||||||||||||||| | |||||||||||||||||||| ||||||   |||    |||||| |   | ||||| ||| ||||||    
T  19394199 acttagctggaatgaggacccgtgcccaaaagggtaccttcaaaattgacttggcagctacggaataaccggttgcaat---agaatagctag-aatgtc 19394104  T
Q  211 aattattgtgtacaatttttcataggga-gagttgtattatagcagttgttatggcttaaatggtcatagactgcatagttttttaggaccttacttttc 309  Q
    | ||||| | || ||||||||||||||| | || || || ||||| ||||||||||  | ||||||||| ||||| ||||||||||||| ||| | ||||    
T  19394103 atttattttatataatttttcatagggaggggtagtcttgtagcaattgttatggc-aatatggtcataaactgcctagttttttaggatcttccctttc 19394005  T
Q  310 tag-------tttggattttctcttcataggttcttcactatgtggctctgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    |||       | | |||| ||| | |||||||||| ||| ||||| |||  |||||||||||||| |||||| ||||||||||||||||||||||||||    
T  19394004 tagggatagatctagattctctttccataggttctccacaatgtgactc--ttgtattggttcagacatctcctgtcttttatattttagtgctttgat 19393908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 91 - 399
Target Start/End: Original strand, 39332358 - 39332677
Alignment:
Q  91 gcaaagtgaagcctgctagctttaacttagctagaatgaggacccgtgcccaaaaagctaccttcaaaattgacttggtagctacattatagttgc---- 186  Q
    ||||||||||||||||| ||||||||| |||   ||||||||||||||||||||| | ||||||||||| |||||||| |||||||  ||| |||         
T  39332358 gcaaagtgaagcctgcttgctttaactcagccgaaatgaggacccgtgcccaaaagggtaccttcaaaaatgacttggcagctacagaataattggtttt 39332457  T
Q  187 attataata--atagatagaaatgtcaattattgtgtacaatttttcatagggagagttgtattatagcagttgttatggcttaaatggtcatagactgc 284  Q
    |||  ||||  |||| ||||||||||| |||||  ||| | ||||||||||| || || || || ||||||||| ||||| | | ||||||||| |||||    
T  39332458 attgcaatagaatagctagaaatgtcatttatttggtatattttttcatagg-agggtagtcttgtagcagttggtatgg-taatatggtcataaactgc 39332555  T
Q  285 atagttttttaggaccttacttttctag-------tttggattttctcttcataggttcttcactatgtggctctgttgtattggttcaggcatctcttg 377  Q
     ||||||||||||| ||| | | |||||       | |||||||||| |||||| ||| | |||||| || ||||||||||||| |||||||||||| ||    
T  39332556 ctagttttttaggatctttcctatctagagatagatctggattttcttttcataagttatccactatatgactctgttgtattgattcaggcatctcctg 39332655  T
Q  378 tcttttatattttagtgctttg 399  Q
    ||||||||||||||||||||||    
T  39332656 tcttttatattttagtgctttg 39332677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 17114885 - 17114743
Alignment:
Q  19 tatcagactttgagcagtactatccaagtctatatgagagcactaatgcagagaaaaagaagaag---catatgagcaaagtgaagcctgctagctttaa 115  Q
    ||||||||||||| ||  ||||| ||||||||| ||||||||||||  |||||| ||||||||||   ||| ||| ||||||||||||||||||||||||    
T  17114885 tatcagactttgaccaacactatgcaagtctatctgagagcactaagacagagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaa 17114786  T
Q  116 cttagctagaatgaggacccgtgcccaaaaagctaccttcaaa 158  Q
    ||  || ||||||||||||| || |||||| | ||||| ||||    
T  17114785 ctctgccagaatgaggacccatgtccaaaagggtacctccaaa 17114743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 333 - 401
Target Start/End: Original strand, 3374558 - 3374626
Alignment:
Q  333 gttcttcactatgtggctctgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    ||||| ||||||||| || ||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  3374558 gttctccactatgtgcctttgttgtattggttcaggcatcttatgtcttttatattttagtgctttgat 3374626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 319 - 401
Target Start/End: Complemental strand, 41034868 - 41034786
Alignment:
Q  319 ttttctcttcataggttcttcactatgtggctctgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    |||||| |||||||||| |||||  |||| ||||| ||||||||||||| | |||| ||||||||||||||||||||||||||    
T  41034868 ttttcttttcataggtttttcacattgtgactctggtgtattggttcagacctctcctgtcttttatattttagtgctttgat 41034786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 41035192 - 41035065
Alignment:
Q  23 agactttgagcagtactatccaagtctatatgagagcactaatgcagagaaaaagaa---gaagcatatgagcaaagtgaagcctgctagctttaactta 119  Q
    ||||||||| ||  ||||||||||||||| |||||||| ||| ||||||||||||||   ||||||  |||  |   |||||||| |||||||||||| |    
T  41035192 agactttgaacaacactatccaagtctatctgagagcaataaggcagagaaaaagaagaagaagcaggtgaatattttgaagccttctagctttaactca 41035093  T
Q  120 gctagaatgaggacccgtgcccaaaaag 147  Q
    ||  ||||||||||||||||||||||||    
T  41035092 gccggaatgaggacccgtgcccaaaaag 41035065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 315 - 401
Target Start/End: Complemental strand, 17114551 - 17114466
Alignment:
Q  315 tggattttctcttcataggttcttcactatgtggctctgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    ||||||||||||||| |  || | |||| ||| ||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  17114551 tggattttctcttcacaaattatccactttgtcgctctattgtattggttcaagcatctctt-tcttttatattttagtgctttgat 17114466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 401
Target Start/End: Original strand, 29061290 - 29061376
Alignment:
Q  313 tttggattttctcttcataggttcttcactatgtggctctgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    |||||||||||| |||||||||||| |||||||   |||| ||| ||||||| ||| ||||| |||||||||||||||||||| |||||    
T  29061290 tttggattttcttttcataggttctccactatga--ctctcttggattggtttaggtatctcatgtcttttatattttagtgcattgat 29061376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 168
Target Start/End: Complemental strand, 49492032 - 49491899
Alignment:
Q  37 actatccaagtctatatgagagcactaatgcagagaaaaag---aagaagcatatgagcaaagtgaagcctgctagctttaacttagctagaatgaggac 133  Q
    ||||||||||||| |  ||||||||||| |||| || ||||   ||||||||| ||| |||||||| |||| ||||||| |||| |||  ||||||||||    
T  49492032 actatccaagtctgttagagagcactaaggcagggagaaagcagaagaagcatgtgaacaaagtga-gcctactagcttcaactcagccggaatgaggac 49491934  T
Q  134 ccgtgcccaaaaagctaccttcaaaattgacttgg 168  Q
    |||||||||||| | ||||| |||| ||| |||||    
T  49491933 ccgtgcccaaaagggtacctccaaagttgccttgg 49491899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 144
Target Start/End: Complemental strand, 50903635 - 50903525
Alignment:
Q  37 actatccaagtctatatgagagcactaatgcagagaaaaag---aagaagcatatgagcaaagtgaagcctgctagctttaacttagctagaatgaggac 133  Q
    ||||||||||||| |  ||||||||||| ||||||  ||||   ||||||||  ||| ||||||||||||| ||||||| |||| |||   |||||||||    
T  50903635 actatccaagtctgtcagagagcactaaggcagagtgaaagcagaagaagcaggtgaacaaagtgaagcctactagcttcaactcagccgaaatgaggac 50903536  T
Q  134 ccgtgcccaaa 144  Q
    |||||||||||    
T  50903535 ccgtgcccaaa 50903525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 139
Target Start/End: Complemental strand, 13062111 - 13062010
Alignment:
Q  41 tccaagtctatatgagagcactaatgcagagaaaaagaa---gaagcatatgagcaaagtgaagcctgctagctttaacttagctagaatgaggacccgt 137  Q
    ||||||||||| ||||||||||||  |||||||||||||   ||||||  ||| |||||||| ||||  ||||||||||| |||   |||||||||||||    
T  13062111 tccaagtctatctgagagcactaagacagagaaaaagaagaagaagcaggtgaacaaagtgatgccttttagctttaactcagccgaaatgaggacccgt 13062012  T
Q  138 gc 139  Q
    ||    
T  13062011 gc 13062010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 326 - 391
Target Start/End: Complemental strand, 44163576 - 44163512
Alignment:
Q  326 ttcataggttcttcactatgtggctctgttgtattggttcaggcatctcttgtcttttatatttta 391  Q
    |||||||||| | ||||||||| ||||||||||||||||||||| |||| || |||| ||||||||    
T  44163576 ttcataggttttacactatgtgactctgttgtattggttcaggcctctcctg-ctttaatatttta 44163512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 145
Target Start/End: Original strand, 3374311 - 3374381
Alignment:
Q  75 aagaagaagcatatgagcaaagtgaagcctgctagctttaacttagctagaatgaggacccgtgcccaaaa 145  Q
    |||||||||||  ||| |||||||||||| ||||| ||||||| |||  ||||||||||  ||||||||||    
T  3374311 aagaagaagcaagtgaacaaagtgaagccggctagatttaactcagccggaatgaggacatgtgcccaaaa 3374381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 7e-50; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 19 - 401
Target Start/End: Original strand, 33191227 - 33191626
Alignment:
Q  19 tatcagactttgagcagtactatccaagtctatatgagagcactaatgcagagaaaaagaagaag---catatgagcaaagtgaagcctgctagctttaa 115  Q
    ||||||||||||||||| |||||||||  ||||  | ||||||||| |||||||||| |||||||   ||| ||||||||||||||||||||||||||||    
T  33191227 tatcagactttgagcagcactatccaaacctatcggggagcactaaagcagagaaaatgaagaagaaacatgtgagcaaagtgaagcctgctagctttaa 33191326  T
Q  116 cttagctagaatgaggacccgtgcccaaaaagctaccttcaaaattgacttggtagctacattata----gttgcattataat--aatagatagaaatgt 209  Q
    || ||||   ||||||||||||||||| || | |||||||||||| ||||||| ||||||   |||    |||  |||  |||  ||||  |||||||||    
T  33191327 ctcagctgacatgaggacccgtgcccagaagggtaccttcaaaatagacttggcagctacggaataactggttttattgcaataaaataactagaaatgt 33191426  T
Q  210 caattattgtgtacaatttttcatagggagagttgtattatagcagttgttatggcttaaatggtcatagactgcatag-ttttttaggaccttactttt 308  Q
    || ||||| | || |||||||||||||||| || || || |||||||||||||||| |  ||||||||| ||||| ||| |||||||||| ||| | |||    
T  33191427 catttattttatataatttttcatagggagggtagtcttgtagcagttgttatggcat-tatggtcataaactgcctagtttttttaggatctttccttt 33191525  T
Q  309 ctag-------tttggattttctcttcataggttcttcactatgtggctc-tgttgtattggttcaggcatctcttgtcttttatattttagtgctttga 400  Q
    ||||       | ||| |||||| ||| |||||||| | | ||||| ||| ||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  33191526 ctagggatagatctggtttttcttttcttaggttctccgcgatgtgactcttgttgtattggttcatgcatctcttgtcttttatattttcgtgctttga 33191625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 326 - 401
Target Start/End: Complemental strand, 19407710 - 19407635
Alignment:
Q  326 ttcataggttcttcactatgtggctctgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    |||||||||| | ||||||||  ||||||||||||||||||||| |||| |||||||||||||||| | |||||||    
T  19407710 ttcataggttttacactatgtatctctgttgtattggttcaggcctctcctgtcttttatattttattactttgat 19407635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 326 - 398
Target Start/End: Complemental strand, 7543922 - 7543850
Alignment:
Q  326 ttcataggttcttcactatgtggctctgttgtattggttcaggcatctcttgtcttttatattttagtgcttt 398  Q
    |||||||||| | | ||||||  ||||||||||||||||||||| |||| |||||||||||||||| ||||||    
T  7543922 ttcataggttttactctatgtatctctgttgtattggttcaggcctctcctgtcttttatattttattgcttt 7543850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 158
Target Start/End: Complemental strand, 19407960 - 19407872
Alignment:
Q  70 agaaaaagaagaagcatatgagcaaagtgaagcctgctagctttaacttagctagaatgaggacccgtgcccaaaaagctaccttcaaa 158  Q
    |||| |||||||||||  ||| ||||||||  ||| |||||||||||| |||  |||||||||||||||||||||| | ||||| ||||    
T  19407960 agaagaagaagaagcaggtgaacaaagtgattccttctagctttaactcagccggaatgaggacccgtgcccaaaagggtacctccaaa 19407872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 401
Target Start/End: Original strand, 39498220 - 39498272
Alignment:
Q  349 ctctgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    |||| |||||||| || || ||||||||||||||||||||||| || ||||||    
T  39498220 ctctcttgtattgatttagacatctcttgtcttttatattttaatgttttgat 39498272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 8831393 - 8831264
Alignment:
Q  19 tatcagactttgagcagtactatccaagtctatatgagagcactaatgcagagaaa---aagaagaagcatatgagcaaagtgaagcctgctagctttaa 115  Q
    ||||||||||||||||  | ||||||||||||| |||||||||||| |||||||||   ||||||||||| |||| |||||||| |||||||||||||||    
T  8831393 tatcagactttgagcaacattatccaagtctatctgagagcactaaggcagagaaagagaagaagaagcacatgaacaaagtgaggcctgctagctttaa 8831294  T
Q  116 cttagctagaatgaggacccgtgcccaaaa 145  Q
    || |||  |||||||||||||||| |||||    
T  8831293 ctcagccggaatgaggacccgtgctcaaaa 8831264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 23 - 145
Target Start/End: Complemental strand, 27786954 - 27786829
Alignment:
Q  23 agactttgagcagtactatccaagtctatatgagagcactaatgcagagaaaaagaag---aagcatatgagcaaagtgaagcctgctagctttaactta 119  Q
    ||||||||||||| ||||||||||||||| |||||||| ||| || |||| |||||||   ||||| ||||  |||||||||||| |||||||||||| |    
T  27786954 agactttgagcagcactatccaagtctatctgagagcaataaggcggagagaaagaagaataagcagatgaataaagtgaagccttctagctttaactca 27786855  T
Q  120 gctagaatgaggacccgtgcccaaaa 145  Q
    ||  ||||||||| ||||||||||||    
T  27786854 gccggaatgaggagccgtgcccaaaa 27786829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 23 - 145
Target Start/End: Complemental strand, 36206587 - 36206462
Alignment:
Q  23 agactttgagcagtactatccaagtctatatgagagcactaatgcagagaaaaagaagaag---catatgagcaaagtgaagcctgctagctttaactta 119  Q
    ||||||||||||  ||| ||||||||||| ||||||||| || ||||||| ||||||||||   || ||||  |||||||||||| ||||||||||||||    
T  36206587 agactttgagcaacactttccaagtctatctgagagcaccaaggcagagagaaagaagaagaagcaaatgaataaagtgaagccttctagctttaactta 36206488  T
Q  120 gctagaatgaggacccgtgcccaaaa 145  Q
    |   |||||||||| |||||| ||||    
T  36206487 gtcggaatgaggactcgtgcctaaaa 36206462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 3072330 - 3072281
Alignment:
Q  352 tgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3072330 tgttgtattggttcaggcatctcctgtcttttatattttagtgctttgat 3072281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 349 - 401
Target Start/End: Complemental strand, 399563 - 399511
Alignment:
Q  349 ctctgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  399563 ctctgttgtattggttcaggcatctcctgtcttttatattttagtgatttgat 399511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 8831066 - 8831017
Alignment:
Q  352 tgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  8831066 tgttgtattggttcagacatctcctgtcttttatattttagtgctttgat 8831017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 145
Target Start/End: Original strand, 29369070 - 29369181
Alignment:
Q  37 actatccaagtctatatgagagcactaatgcagagaaaaaga---agaagcatatgagcaaagtgaagcctgctagctttaacttagctagaatgaggac 133  Q
    ||||||||||||||| ||||||||||||  || ||| |||||   |||||||  |||  ||||||| |||| | |||||||||| ||| |||||||||||    
T  29369070 actatccaagtctatctgagagcactaagacaaagataaagaagaagaagcacgtgaataaagtgatgccttcaagctttaactgagccagaatgaggac 29369169  T
Q  134 ccgtgcccaaaa 145  Q
    ||||||||||||    
T  29369170 ccgtgcccaaaa 29369181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 401
Target Start/End: Original strand, 29369370 - 29369455
Alignment:
Q  316 ggattttctcttcataggttcttcactatgtggctctgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    ||||| ||| |||||||||| | | ||||||  ||||||||||||||| ||||| |||| |||||||||||||||| |||||||||    
T  29369370 ggattctcttttcataggttttactctatgtatctctgttgtattggtccaggcctctcctgtcttttatattttattgctttgat 29369455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 355 - 401
Target Start/End: Complemental strand, 14295291 - 14295245
Alignment:
Q  355 tgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||    
T  14295291 tgtattggttcaggcctctcctgtcttttatattttagtgctttgat 14295245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 319 - 401
Target Start/End: Complemental strand, 27786636 - 27786554
Alignment:
Q  319 ttttctcttcataggttcttcactatgtggctctgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    |||||| |||||||||  | |||  |||| || |||||||||||||||||| |||| ||| ||||||||||||||||||||||    
T  27786636 ttttcttttcataggtcttacacattgtgactttgttgtattggttcaggcctctcctgtattttatattttagtgctttgat 27786554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 399891 - 399792
Alignment:
Q  19 tatcagactttgagcagtactatccaagtctatatgagagcactaatgcagagaaaaagaagaag---catatgagcaaagtgaagcctgctagctttaa 115  Q
    ||||| ||||||||||  ||||||| ||| |||||||||||||||| ||||||| ||||||||||   ||| ||| |||||||| |  ||||||||||||    
T  399891 tatcaaactttgagcaacactatccgagtttatatgagagcactaaggcagagagaaagaagaagaaacatgtgaacaaagtgaggtttgctagctttaa 399792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 133
Target Start/End: Complemental strand, 28225864 - 28225767
Alignment:
Q  39 tatccaagtctatatgagagcactaatgcagaga---aaaagaagaagcatatgagcaaagtgaagcctgctagctttaacttagctagaatgaggac 133  Q
    ||||||||||||| |||||||||||| | |||||   |||||||||||||| ||| ||||||||||  || || |||||||| |||  ||||||||||    
T  28225864 tatccaagtctatctgagagcactaaggtagagagagaaaagaagaagcatgtgatcaaagtgaagtttgttaactttaactcagccggaatgaggac 28225767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 350 - 399
Target Start/End: Complemental strand, 36206298 - 36206249
Alignment:
Q  350 tctgttgtattggttcaggcatctcttgtcttttatattttagtgctttg 399  Q
    |||| ||||||| ||||||| |||| ||||||||||||||||||||||||    
T  36206298 tctgatgtattgattcaggcctctcctgtcttttatattttagtgctttg 36206249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 401
Target Start/End: Original strand, 3801292 - 3801344
Alignment:
Q  349 ctctgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    ||||| ||||||||||||| | |||| |||||||||||||||| | |||||||    
T  3801292 ctctgatgtattggttcagacctctcctgtcttttatattttattactttgat 3801344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 24240011 - 24239885
Alignment:
Q  19 tatcagactttgagcagtactatccaagtctatatgagagcactaatgcagagaaaaagaagaagcatatgagcaaagtgaagcctgctagctttaactt 118  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||| |||  || |||||||||| |  |||  |||||||||||| ||||||||||||     
T  24240011 tatcagactttgagcagcactatccaagtctatctgagagcactaaggcatcgagaaagaagaagtaggtgaataaagtgaagcctactagctttaactc 24239912  T
Q  119 agctagaatgaggacccgtgcccaaaa 145  Q
    |||  ||||||||||||||||||||||    
T  24239911 agccggaatgaggacccgtgcccaaaa 24239885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 39 - 145
Target Start/End: Complemental strand, 16593920 - 16593811
Alignment:
Q  39 tatccaagtctatatgagagcactaatgcagagaaaaagaag---aagcatatgagcaaagtgaagcctgctagctttaacttagctagaatgaggaccc 135  Q
    |||||||||||||  ||||||||||| |||||||||||||||   |||||  ||  |||||||| ||||||||| |||||||||||  ||||||| ||||    
T  16593920 tatccaagtctatcggagagcactaaggcagagaaaaagaagtagaagcacgtgcacaaagtgaggcctgctagttttaacttagccggaatgagaaccc 16593821  T
Q  136 gtgcccaaaa 145  Q
    ||||||||||    
T  16593820 gtgcccaaaa 16593811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 37049967 - 37050092
Alignment:
Q  37 actatccaagtctatatgagagcactaatgcagagaaaaagaagaag---catatgagcaaagtgaagcc-tgctagctttaacttagctagaatgagga 132  Q
    ||||||||||||||| ||| |||||||| ||||||||||||||||||   ||| ||| |||||||||||| | |||| ||||||| |||  |||||||||    
T  37049967 actatccaagtctatctgaaagcactaaggcagagaaaaagaagaagaaacatgtgaacaaagtgaagcctttctagttttaactcagccggaatgagga 37050066  T
Q  133 cccgtgcccaaaaagctaccttcaaa 158  Q
    | ||||||||||| | ||||| ||||    
T  37050067 ctcgtgcccaaaagggtacctccaaa 37050092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 349 - 401
Target Start/End: Original strand, 19852785 - 19852836
Alignment:
Q  349 ctctgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  19852785 ctctgttgtattggttcaggcatctcctgtctttt-tattttagtgctttgat 19852836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 145
Target Start/End: Original strand, 19852453 - 19852562
Alignment:
Q  39 tatccaagtctatatgagagcactaatgcagagaaaaaga---agaagcatatgagcaaagtgaagcctgctagctttaacttagctagaatgaggaccc 135  Q
    |||||||||||||  ||||||||||| |||||||||||||   |||||||  ||  |||||||| ||||||||| ||||||| | |  ||||||| ||||    
T  19852453 tatccaagtctatcggagagcactaaggcagagaaaaagaagaagaagcacgtgcacaaagtgaggcctgctagttttaactcacccggaatgagaaccc 19852552  T
Q  136 gtgcccaaaa 145  Q
    ||||||||||    
T  19852553 gtgcccaaaa 19852562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 401
Target Start/End: Original strand, 37050306 - 37050380
Alignment:
Q  326 ttcataggttcttcactatgtggctctgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    |||||||||| | ||||||||| ||||||||||||||||| ||| |||| || ||||||||||||| |||||||||    
T  37050306 ttcataggttttacactatgtgactctgttgtattggttcgggcctctcatg-cttttatattttattgctttgat 37050380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 349 - 401
Target Start/End: Complemental strand, 16593588 - 16593537
Alignment:
Q  349 ctctgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    ||||||||||||||||||| |||||| |||||||| |||||||||||||||||    
T  16593588 ctctgttgtattggttcagacatctcctgtctttt-tattttagtgctttgat 16593537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 401
Target Start/End: Complemental strand, 18522099 - 18522040
Alignment:
Q  342 tatgtggctctgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    |||||| ||||| | ||||||||||||| |||| |||||||||||||||| |||||||||    
T  18522099 tatgtgactctgatatattggttcaggcctctcctgtcttttatattttattgctttgat 18522040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 401
Target Start/End: Original strand, 7500378 - 7500429
Alignment:
Q  350 tctgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    |||||||||||||||||||| | || ||||| |||||||||| |||||||||    
T  7500378 tctgttgtattggttcaggcctatcctgtctgttatattttattgctttgat 7500429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 16832310 - 16832189
Alignment:
Q  20 atcagactttgagcagtactatccaagtctatatgagagcactaatgcagagaaaaagaa---gaagcatatgagcaaagtgaagcctgctagctttaac 116  Q
    |||||||||||||||| | | ||||| ||| | | |||| ||||| ||||||| || |||   ||||||| ||| ||||||||||||| ||| |||||||    
T  16832310 atcagactttgagcagcattgtccaactctttcttagagaactaaggcagagagaaggaataagaagcatgtgaacaaagtgaagcctactaactttaac 16832211  T
Q  117 ttagctagaatgaggacccgtg 138  Q
    | || | |||||||||| ||||    
T  16832210 tcagttggaatgaggacacgtg 16832189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 401
Target Start/End: Original strand, 7492293 - 7492378
Alignment:
Q  316 ggattttctcttcataggttcttcactatgtggctctgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    ||||| ||| || ||||||| | | ||||||  |||||||||||||||| |||| | || |||||||||||||||| | |||||||    
T  7492293 ggattctcttttaataggttttactctatgtatctctgttgtattggttgaggcctatcctgtcttttatattttattactttgat 7492378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 4263538 - 4263388
Alignment:
Q  18 gtatcagactttgagcagtactatccaagtctatatgagagcactaatgcagagaaaaagaagaagcatatgagcaaagtgaagcctgctagctttaact 117  Q
    |||||||||||||||| | |||||||||  || | | |||||||||| ||||||||||||||||||||| | | |||| ||||||||||||| |||||||    
T  4263538 gtatcagactttgagcggcactatccaaacctttctaagagcactaaggcagagaaaaagaagaagcatgtaaacaaaatgaagcctgctagttttaact 4263439  T
Q  118 tagctagaatgaggacccgtgcccaaaaagctaccttcaaaattgacttgg 168  Q
     |||  |||||||||||||||| ||||| | | ||| |||||||| |||||    
T  4263438 cagccggaatgaggacccgtgctcaaaagggttcctccaaaattgtcttgg 4263388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 10989973 - 10990102
Alignment:
Q  19 tatcagactttgagcagtactatccaagtctatatgagagcactaatgcagagaaaaagaagaagcat-atgag--caaagtgaagcctgctagctttaa 115  Q
    ||||||||||||||||| |||||||| ||  || |||||||||||| |||| || ||||||||||||  | |||  ||||||||| ||| ||||||||||    
T  10989973 tatcagactttgagcagcactatccatgtaaatctgagagcactaaggcagcgagaaagaagaagcagcaagagaacaaagtgaatccttctagctttaa 10990072  T
Q  116 cttagctagaatgaggacccgtgcccaaaa 145  Q
    ||||||   ||||||||| ||||| |||||    
T  10990073 cttagccgaaatgaggactcgtgcacaaaa 10990102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 25167810 - 25167934
Alignment:
Q  37 actatccaagtctatatgagagcactaatgcagagaaaaagaagaag---catatgagcaaagtgaagcctgctagctttaacttagctagaatgaggac 133  Q
    ||||||||||||||| ||| |||||||| ||||||| ||||||||||   ||| ||| ||||||||||||| |||| ||||||| |||  ||| ||||||    
T  25167810 actatccaagtctatctgaaagcactaaggcagagagaaagaagaagaaacatgtgaacaaagtgaagccttctagttttaactcagccggaaagaggac 25167909  T
Q  134 ccgtgcccaaaaagctaccttcaaa 158  Q
     | ||||||||| | ||||| ||||    
T  25167910 tcatgcccaaaagggtacctccaaa 25167934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 401
Target Start/End: Original strand, 3949640 - 3949714
Alignment:
Q  326 ttcataggttcttcactatgtggctctgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    |||||||||| | ||||||||| ||||||||||||||||||| | |||| || ||||||||||||| |||||||||    
T  3949640 ttcataggttttacactatgtgtctctgttgtattggttcagacctctcatg-cttttatattttattgctttgat 3949714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 326 - 400
Target Start/End: Original strand, 25168148 - 25168221
Alignment:
Q  326 ttcataggttcttcactatgtggctctgttgtattggttcaggcatctcttgtcttttatattttagtgctttga 400  Q
    |||||||||| | ||||||||| ||||||||||||||||||||| |||| |  ||||||||||||| ||||||||    
T  25168148 ttcataggttttacactatgtgactctgttgtattggttcaggcctctcct-acttttatattttactgctttga 25168221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 326 - 401
Target Start/End: Complemental strand, 2606685 - 2606611
Alignment:
Q  326 ttcataggttcttcactatgtggctctgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    |||||||||| |||||| |||| ||||| ||||||||||||||| ||||  | ||||||||||||| |||||||||    
T  2606685 ttcataggtttttcactttgtgactctgatgtattggttcaggcttctccag-cttttatattttactgctttgat 2606611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 401
Target Start/End: Original strand, 10990286 - 10990368
Alignment:
Q  319 ttttctcttcataggttcttcactatgtggctctgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    |||||| |||||||||| |||||  |||| ||||| ||||||||||||| | ||||  |||||| |||||||||| |||||||    
T  10990286 ttttcttttcataggttgttcacattgtgactctgctgtattggttcagacctctcccgtctttaatattttagtactttgat 10990368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 401
Target Start/End: Original strand, 13535386 - 13535437
Alignment:
Q  349 ctctgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    |||| |||||||||||||| |||||| |||||||| |||||||||||||||||    
T  13535386 ctctattgtattggttcagacatctcctgtctttt-tattttagtgctttgat 13535437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 21845063 - 21844910
Alignment:
Q  18 gtatcagactttgagcagtactatccaagtctatatgagagcactaatgcagagaaaa---agaagaagcatatgagcaaagtgaagcctgctagcttta 114  Q
    |||||| ||||||||||| |||||||||| ||||||||||||| ||| ||||||||||   ||||||||| | |||| ||||||||| ||||| | ||||    
T  21845063 gtatcatactttgagcagcactatccaagcctatatgagagcattaaggcagagaaaaattagaagaagcctgtgagaaaagtgaagtctgcttgattta 21844964  T
Q  115 acttagctagaatgaggacccgtgcccaaaaagctaccttcaaaattgacttgg 168  Q
    ||| ||||  ||| ||||||||||| ||||| |  |||| ||||||||||||||    
T  21844963 actcagctgaaataaggacccgtgctcaaaagggcacctccaaaattgacttgg 21844910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 16893033 - 16893155
Alignment:
Q  26 ctttgagcagtactatccaagtctatatgagagcactaatgcagagaaaaag---aagaagcatatgagcaaagtgaagcctgctagctttaacttagct 122  Q
    |||||||||| ||||||||||||| |  ||||||||||| ||||| ||||||   ||||||||  ||| ||||||||||||| |||| || |||| |||     
T  16893033 ctttgagcagcactatccaagtctgtcagagagcactaaggcagataaaaagcaaaagaagcaggtgaacaaagtgaagcctactaggttcaactcagcc 16893132  T
Q  123 agaatgaggacccgtgcccaaaa 145  Q
     |||||||||||||||| |||||    
T  16893133 ggaatgaggacccgtgctcaaaa 16893155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 349 - 401
Target Start/End: Complemental strand, 18028383 - 18028331
Alignment:
Q  349 ctctgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  18028383 ctctgttgtattggttcaggcatctcatatcttttatattttagtgctttgat 18028331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 27 - 145
Target Start/End: Original strand, 51524824 - 51524945
Alignment:
Q  27 tttgagcagtactatccaagtctatatgagagcactaatgc--agagaaa-aagaagaagcatatgagcaaagtgaagcctgctagctttaacttagcta 123  Q
    ||||||||| ||||||||||||||| |||||||| ||| ||  ||||||| |||||||||||  ||   ||||||| ||||  ||||||||||| |||      
T  51524824 tttgagcagcactatccaagtctatctgagagcaataaggctgagagaaagaagaagaagcaggtgcataaagtgaggccttatagctttaactcagccg 51524923  T
Q  124 gaatgaggacccgtgcccaaaa 145  Q
    ||||||||||||||||||||||    
T  51524924 gaatgaggacccgtgcccaaaa 51524945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 326 - 398
Target Start/End: Original strand, 29347102 - 29347174
Alignment:
Q  326 ttcataggttcttcactatgtggctctgttgtattggttcaggcatctcttgtcttttatattttagtgcttt 398  Q
    |||||||||| | | ||||||  ||||||||||||||||||||| |||| |||||||||||||||| ||||||    
T  29347102 ttcataggttttactctatgtatctctgttgtattggttcaggcctctcctgtcttttatattttattgcttt 29347174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 145
Target Start/End: Original strand, 31067144 - 31067254
Alignment:
Q  39 tatccaagtctatatgagagcactaatgcagagaaa---aagaagaagcatatgagcaaagtgaagcctgctagctttaacttag-ctagaatgaggacc 134  Q
    |||||||||||||  ||||||||||| |||||||||   |||||||||||| ||  |||||||| || |||||||||||||| || |  |||||||||||    
T  31067144 tatccaagtctatcggagagcactaaggcagagaaaaagaagaagaagcatgtgcacaaagtgaggcttgctagctttaactcagtcgggaatgaggacc 31067243  T
Q  135 cgtgcccaaaa 145  Q
    |||||| ||||    
T  31067244 cgtgcctaaaa 31067254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 316 - 398
Target Start/End: Original strand, 51525125 - 51525207
Alignment:
Q  316 ggattttctcttcataggttcttcactatgtggctctgttgtattggttcaggcatctcttgtcttttatattttagtgcttt 398  Q
    |||||| || |||||||||| | |||  |||  |||||||||||||| |||||| |||| |||||||||||||||||||||||    
T  51525125 ggatttacttttcataggttttacacattgtaactctgttgtattggctcaggcctctcctgtcttttatattttagtgcttt 51525207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 401
Target Start/End: Complemental strand, 3367300 - 3367243
Alignment:
Q  344 tgtggctctgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    |||| ||||||||||||| |||| ||||||| ||| ||||||||||||||||||||||    
T  3367300 tgtgactctgttgtattgattcatgcatctcctgttttttatattttagtgctttgat 3367243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 145
Target Start/End: Complemental strand, 35526718 - 35526603
Alignment:
Q  37 actatccaagtctatatgagagcactaatgcagagaaa-------aagaagaagcatatgagcaaagtgaagcctgctagctttaacttagctagaatga 129  Q
    ||||||||||||||| |||||||||||||  ||| |||       |||||||||||  ||| |||||||| |||| ||||||||||||  ||  ||||||    
T  35526718 actatccaagtctatctgagagcactaattaagacaaagagtaagaagaagaagcaggtgaacaaagtgatgccttctagctttaactcggccggaatga 35526619  T
Q  130 ggacccgtgcccaaaa 145  Q
    ||||||||||||||||    
T  35526618 ggacccgtgcccaaaa 35526603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 26796991 - 26796927
Alignment:
Q  19 tatcagactttgagcagtactatccaagtctatatgagagcactaatgcagagaaaaagaagaag 83  Q
    ||||||| ||||||||| || |||| ||||||| |||||||||||| ||||||| ||||||||||    
T  26796991 tatcagattttgagcagcaccatccgagtctatctgagagcactaaggcagagagaaagaagaag 26796927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 350 - 401
Target Start/End: Complemental strand, 21844752 - 21844701
Alignment:
Q  350 tctgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    ||||||||||| |||||| |||||| ||||||||||||||||||| ||||||    
T  21844752 tctgttgtattagttcagacatctcctgtcttttatattttagtgttttgat 21844701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 401
Target Start/End: Complemental strand, 26796643 - 26796582
Alignment:
Q  339 cactatgtggctctgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    |||| |||| |||||||||||||||||| ||||||  |||||||||| |||||||||||||||    
T  26796643 cactttgtgactctgttgtattggttcaagcatcttctgtcttttat-ttttagtgctttgat 26796582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 401
Target Start/End: Complemental strand, 35526354 - 35526303
Alignment:
Q  349 ctctgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    |||| |||||||||||||||| ||||| ||||||||||||||| |||||||||    
T  35526354 ctctattgtattggttcaggcctctct-gtcttttatattttattgctttgat 35526303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 145
Target Start/End: Original strand, 29346801 - 29346876
Alignment:
Q  70 agaaaaagaagaagcatatgagcaaagtgaagcctgctagctttaacttagctagaatgaggacccgtgcccaaaa 145  Q
    |||| |||||||||||  ||| ||| |||| ||||  |||||||||||||||  |||||||||||||||| |||||    
T  29346801 agaagaagaagaagcaggtgaacaacgtgatgccttatagctttaacttagccggaatgaggacccgtgcacaaaa 29346876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 83
Target Start/End: Original strand, 29346763 - 29346805
Alignment:
Q  41 tccaagtctatatgagagcactaatgcagagaaaaagaagaag 83  Q
    ||||||||||| ||||||||||||  |||||||||||||||||    
T  29346763 tccaagtctatttgagagcactaagacagagaaaaagaagaag 29346805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 18693052 - 18693179
Alignment:
Q  18 gtatcagactttgagcagtactatccaagtctatatgagagcactaatgcagagaaaaagaagaagcatatgagcaaagtgaagcctgctagctttaact 117  Q
    |||| |||||||| |||| |||||||||  || |||||||||||||| ||||||||||||||||||| |   | |||||||||| |||||||||||||||    
T  18693052 gtattagactttgtgcagcactatccaaacctttatgagagcactaaggcagagaaaaagaagaagcgtgcaaacaaagtgaagtctgctagctttaact 18693151  T
Q  118 tagctagaatgaggacccgtgcccaaaa 145  Q
     |||  ||||||||||| ||||| ||||    
T  18693152 aagccggaatgaggacctgtgcctaaaa 18693179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 349 - 401
Target Start/End: Complemental strand, 18811533 - 18811481
Alignment:
Q  349 ctctgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  18811533 ctctgttgtattggttcaggcctctcctgtcttttatattttagtgctttgat 18811481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 31 - 185
Target Start/End: Complemental strand, 14296417 - 14296260
Alignment:
Q  31 agcagtactatccaagtctatatgagagcactaatgcagagaaaaagaagaag---catatgagcaaagtgaagcctgctagctttaacttagctagaat 127  Q
    ||||| ||||||||||||||| |||||| ||||| | ||||| ||||||||||   || |||| |||| |||||||| |||||||||||| |||  ||||    
T  14296417 agcagcactatccaagtctatctgagagtactaaggtagagagaaagaagaagaagcagatgaacaaaatgaagcctactagctttaactcagccggaat 14296318  T
Q  128 gaggacccgtgcccaaaaagctaccttcaaaattgacttggtagctacattatagttg 185  Q
    ||| || |||| |||||| | ||||| ||||  || ||||| || ||||| |||||||    
T  14296317 gagcactcgtgtccaaaagggtacctccaaagatgccttggcagatacataatagttg 14296260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 349 - 401
Target Start/End: Original strand, 13502884 - 13502936
Alignment:
Q  349 ctctgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    ||||||||||||| |||| ||||||| ||||||||||||||||||||||||||    
T  13502884 ctctgttgtattgattcatgcatctcctgtcttttatattttagtgctttgat 13502936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 145
Target Start/End: Complemental strand, 18811868 - 18811747
Alignment:
Q  27 tttgagcagtactatccaagtctatatgagagcactaatgcagagaaaaagaagaag---catatgagcaaagtgaagcctgctagctttaacttagcta 123  Q
    ||||||||| ||||||||||| ||| |||||||| ||| ||||||| ||||||||||   ||  ||   |||||||||| |  ||||||||||| |||      
T  18811868 tttgagcagcactatccaagtttatttgagagcaataaggcagagagaaagaagaagaagcaggtgcataaagtgaagctttatagctttaactcagccg 18811769  T
Q  124 gaatgaggacccgtgcccaaaa 145  Q
    ||||||||||||||||||||||    
T  18811768 gaatgaggacccgtgcccaaaa 18811747  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 31092283 - 31092407
Alignment:
Q  37 actatccaagtctatatgagagcactaatgcagagaaaaagaagaagcata---tgagcaaagtgaagcctgctagctttaacttagctagaatgaggac 133  Q
    ||||||||||||||| ||||||||||||  |||||| |||||||||| ||    |||  ||||||| |||| |||| ||||||| |||  ||||||||||    
T  31092283 actatccaagtctatctgagagcactaagacagagagaaagaagaagaatcacgtgaataaagtgatgccttctagatttaactcagccggaatgaggac 31092382  T
Q  134 ccgtgcccaaaaagctaccttcaaa 158  Q
     ||||||||||| | ||||| ||||    
T  31092383 tcgtgcccaaaagggtacctccaaa 31092407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 401
Target Start/End: Original strand, 30180089 - 30180171
Alignment:
Q  319 ttttctcttcataggttcttcactatgtggctctgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    |||||| ||||||| || | |||| |||| ||||| ||||||| ||||||| ||||| ||| ||||||||||| |||||||||    
T  30180089 ttttcttttcatagattttacactttgtgactctggtgtattgattcaggcctctctcgtcgtttatattttattgctttgat 30180171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 145
Target Start/End: Original strand, 37344586 - 37344697
Alignment:
Q  37 actatccaagtctatatgagagcactaatgcagagaaaaagaagaag---catatgagcaaagtgaagcctgctagctttaacttagctagaatgaggac 133  Q
    ||||||||||||||| ||| |||||||| ||||||| ||||||||||   ||  ||| ||||||||| | | |||| ||||||| |||  |||||||||     
T  37344586 actatccaagtctatttgaaagcactaaggcagagagaaagaagaagaaacaggtgaacaaagtgaatcattctagttttaactcagccggaatgaggat 37344685  T
Q  134 ccgtgcccaaaa 145  Q
     |||||||||||    
T  37344686 tcgtgcccaaaa 37344697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 145
Target Start/End: Original strand, 13502653 - 13502760
Alignment:
Q  41 tccaagtctatatgagagcactaatgcagagaaaaagaagaagcatat---gagcaaagtgaagcctgctagctttaacttagctagaatgaggacccgt 137  Q
    ||||||||| |  ||||||||||| |||||||||||||||||| |  |   || |||||  | | ||||||||||||||| ||| |||||||||  ||||    
T  13502653 tccaagtctttcggagagcactaaggcagagaaaaagaagaagaagctcgtgaacaaaggaaggtctgctagctttaactcagccagaatgagggtccgt 13502752  T
Q  138 gcccaaaa 145  Q
    ||||||||    
T  13502753 gcccaaaa 13502760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 401
Target Start/End: Original strand, 31092619 - 31092668
Alignment:
Q  352 tgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    |||||||||||||||||  ||||  ||||||||||||||| |||||||||    
T  31092619 tgttgtattggttcaggtctctcccgtcttttatattttattgctttgat 31092668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 401
Target Start/End: Original strand, 45513477 - 45513526
Alignment:
Q  352 tgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    ||||| |||| ||||||||||||  |||||||||||||||||||| ||||    
T  45513477 tgttgcattgattcaggcatctccagtcttttatattttagtgctgtgat 45513526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 10208 - 10337
Alignment:
Q  19 tatcagactttgagcagtactatccaagtctatatgagagcactaatgcagagaaaaaga---agaagcatatgagcaaagtgaagcctgctagctttaa 115  Q
    |||| ||||||||| | || |||||||||||||  ||||||||||| |||||||||||||   |||||||  ||  |||||||| ||||||||| |||||    
T  10208 tatctgactttgagaaatattatccaagtctatcggagagcactaaggcagagaaaaagaagaagaagcacgtgcacaaagtgaggcctgctagttttaa 10307  T
Q  116 cttagctagaatgaggacccgtgcccaaaa 145  Q
    || |||  ||||||||||||||||| ||||    
T  10308 ctcagccggaatgaggacccgtgcctaaaa 10337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 349 - 401
Target Start/End: Original strand, 10560 - 10611
Alignment:
Q  349 ctctgttgtattggttcaggcatctcttgtcttttatattttagtgctttgat 401  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  10560 ctctgttgtattggttcaggcatctcctgtctttt-tattttagtgctttgat 10611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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